Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B19
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    27   0.44 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   0.59 
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   1.0  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    24   2.4  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    24   2.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    24   3.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    23   5.5  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    23   5.5  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    23   5.5  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    23   7.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    23   7.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    23   7.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    22   9.6  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    22   9.6  

>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
          protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 13 MKVTVTGGGGFLGARLADYLLE 78
          M++ VTG  GF+G+ +   LLE
Sbjct: 1  MRIFVTGAAGFIGSEIVRQLLE 22


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 25 VTGGGGFLGARLADYLLE 78
          +TGG GF+G+   DY ++
Sbjct: 14 ITGGAGFIGSNFLDYAVD 31


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 19 VTVTGGGGFLGARLADYLLE 78
          V VTG  GF+GA +A+ LL+
Sbjct: 6  VLVTGVTGFIGAHVAEQLLQ 25


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 19 VTVTGGGGFLGARLADYLLE 78
          V VTGG G++G+     LLE
Sbjct: 9  VLVTGGAGYIGSHTCVVLLE 28


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
          protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 13 MKVTVTGGGGFLG 51
          MK+ V GG GFLG
Sbjct: 1  MKIVVLGGSGFLG 13


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 76  ENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTGPGVAE 210
           E + P R SAL  T+V +  L    HA + +S  A   + P + +
Sbjct: 205 ELKSPSRPSALAETNVEELELDSLFHASNDISCSATSFSEPYILD 249


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 213 LLGDAGPGHVRGESRDARVRMSL 145
           +LG  G G +R  S D+R ++ L
Sbjct: 422 MLGQEGEGKIRAVSIDSRTKLRL 444


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 64  DYLLENECPLRV 99
           D LL+NECPL V
Sbjct: 144 DRLLQNECPLYV 155


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 218 TSCSATPGPVTSAARVETRESAC 150
           T C AT GP    + VE + S C
Sbjct: 335 TKCGATLGPFFQDSSVEVKISFC 357


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 67  YLLENECPLRVSALLLTDVHQPTLSP 144
           Y+L+    LR   L+L D  +  LSP
Sbjct: 36  YMLDESTKLRHGKLVLYDTKEDVLSP 61


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 19   VTVTGGGGFLGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADS 162
            V +TG  G+LG  +   L+     L+V AL+     +  L  KR  DS
Sbjct: 1007 VFLTGANGYLGVFILRDLMTRSSNLKVIALVRASSEEHGL--KRLKDS 1052


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 94  AEGTRFPIDNQRDELRGILRR 32
           A  T  PIDN ++ L  +LRR
Sbjct: 861 ASTTLHPIDNAKNRLVSLLRR 881


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 67  NQRDELRGILRRR 29
           NQR+E   ILRRR
Sbjct: 936 NQREEAENILRRR 948


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 55  RLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAAD-VTGPGV 204
           R+A  L E   PL +     ++  +    PK+ + S VS  A+  + GPGV
Sbjct: 163 RVASALYEESSPLELEIRSESEFSKMFFEPKK-SSSFVSRAASPAMVGPGV 212


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 79   NECPLRVSALLLTDVH 126
            N+ P+R++ALL+ + H
Sbjct: 2714 NDAPVRLNALLMDNAH 2729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,205
Number of Sequences: 5004
Number of extensions: 8397
Number of successful extensions: 34
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)