Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B18
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal prote... 54 6e-08
Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical p... 29 2.7
Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 29 2.7
U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal prote... 27 6.3
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z54235-3|CAA90973.2| 288|Caenorhabditis elegans Hypothetical pr... 27 8.4
U39655-3|AAA80409.2| 718|Caenorhabditis elegans Fatty acid coa ... 27 8.4
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ... 27 8.4
>U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform a protein.
Length = 130
Score = 54.0 bits (124), Expect = 6e-08
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +1
Query: 133 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNYL-GNHVVIRRDKTKVAI 297
+ LKF ++C +P ED IL + + E +L E++KV GKT +L N+V + K+KV++
Sbjct: 19 VHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSV 74
Score = 33.9 bits (74), Expect = 0.073
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 281 RQKSLSTADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 427
+ K +++PFS DWLRVVA ++YE+RYF
Sbjct: 69 KSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117
>Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical
protein R186.5 protein.
Length = 479
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 177 ILSRVCAVNGKFKANLPLGTFAANFATFYS 88
++ +CA+ G LP+ +NFA FYS
Sbjct: 391 LIGSICALAGVLTIALPVPVIVSNFAMFYS 420
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 177 ILSRVCAVNGKFKANLPLGTFAANFATFYS 88
++ +CAV G LP+ +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 177 ILSRVCAVNGKFKANLPLGTFAANFATFYS 88
++ +CAV G LP+ +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 177 ILSRVCAVNGKFKANLPLGTFAANFATFYS 88
++ VCA+ G LP+ +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518
>Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 177 ILSRVCAVNGKFKANLPLGTFAANFATFYS 88
++ VCA+ G LP+ +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 177 ILSRVCAVNGKFKANLPLGTFAANFATFYS 88
++ +CAV G LP+ +NFA FYS
Sbjct: 419 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 448
>U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform b protein.
Length = 53
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 133 ISLKFTIDCTHPAEDSILDV 192
+ LKF ++C +P ED IL +
Sbjct: 19 VHLKFNVECKNPVEDGILRI 38
>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 208 YLKERVKVEGKTNYLGNHVVIRRDKTKVAINRRH 309
Y+K RV V T+Y N +RRD++ + RH
Sbjct: 4180 YIK-RVTVTSSTDYGKNQATLRRDRSPIQAVARH 4212
>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 208 YLKERVKVEGKTNYLGNHVVIRRDKTKVAINRRH 309
Y+K RV V T+Y N +RRD++ + RH
Sbjct: 4180 YIK-RVTVTSSTDYGKNQATLRRDRSPIQAVARH 4212
>Z54235-3|CAA90973.2| 288|Caenorhabditis elegans Hypothetical
protein C09G9.3 protein.
Length = 288
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 300 PQTFPSQRGISNT*PSVTSRKTIFGTG 380
P T PS G + T P+VT+ T+ TG
Sbjct: 69 PSTTPSPTGSTTTDPTVTTTTTVVPTG 95
>U39655-3|AAA80409.2| 718|Caenorhabditis elegans Fatty acid coa
synthetase familyprotein 17 protein.
Length = 718
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 196 NFEKYLKERVKVEGKTNY-LGNHVVIRRDKTKVAINRRHSLLK 321
N EK +E VKV GKT + G+ R D + I+R+ LLK
Sbjct: 543 NDEKTKEEFVKVNGKTFFATGDIGEFREDGSLKIIDRKKDLLK 585
>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 208 YLKERVKVEGKTNYLGNHVVIRRDKTKVAINRRH 309
Y+K RV V T+Y N +RRD++ + RH
Sbjct: 4180 YIK-RVTVTSSTDYGKNQATLRRDRSPIQAVARH 4212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,982
Number of Sequences: 27780
Number of extensions: 222934
Number of successful extensions: 615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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