Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B17
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   171   6e-44
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.2  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   4.2  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    25   9.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.6  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   9.6  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   9.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  171 bits (417), Expect = 6e-44
 Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 3/152 (1%)
 Frame = +2

Query: 77  KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGL-SKGKHGFHVHEFGDNTNGCTSAG 247
           +AV VL GD  VSG V F+Q D++S V V  ++ G  +  K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 248 AHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVH 427
            HFNP  + HG   +  RH+GDLGN+E+ + G + K    DS ISL G NSI+GRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIVIH 121

Query: 428 ADPDDLGLGGHELSKSTGNAGARIACGVIGLA 523
           A  DDLG G  E S  TGNAGAR ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 575  EPINYKSLGVLEEKLKSWLI 516
            E IN++  GVL   LK+WL+
Sbjct: 1349 EEINFQEAGVLTAPLKNWLV 1368


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 413  CVQQCCWVQLTRSESP 366
            C Q+CC + LT S+SP
Sbjct: 1422 CAQECCRILLTDSKSP 1437


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +2

Query: 95  HGDVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQE 274
           H     +++FD  DE +    +  +  +++   G +  +  +  NG  S     N  K+E
Sbjct: 24  HPSAGDSIYFDSLDEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKEN-TKKE 82

Query: 275 HGAPDSDTR 301
              P+  TR
Sbjct: 83  ISNPNDSTR 91


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 466 QFVTSKSEIIRIRMDYQSASNNAVGSN*RDLRVLNANLSNTTITGSFNI 320
           ++VTS +  IR+++D   A+N+ +  N  DLR   A    TT  G+  I
Sbjct: 57  KWVTSNNIKIRVQVDETFANNHLIYKN--DLRSNEAVRFTTTNEGTHRI 103


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 469 QVYRQCWSPYCLRCHRISQDLSFSSSTPSDL*LIGSNIYFFVSKRYS 609
           QV  Q  S +    H + Q  S S   PSD   +G NI+   SK++S
Sbjct: 485 QVIDQVLSDWYSGKHELVQQ-SHSYKKPSDSKSVGGNIFSVNSKKHS 530


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 LIGSNIYFFVSKRYSGQTTIAFIXILLTYNM 657
           L  SN+  FV+K Y+     +F+ IL  YN+
Sbjct: 109 LSNSNVQPFVNKFYTSTVFPSFLQILKQYNV 139


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 165 KSKDLVRASTVSMYMSLVTIPTVAPLLE 248
           K+KD +RA  +S+Y+ L  I   A LL+
Sbjct: 247 KNKDALRAHLLSLYLVLPLIGVTAGLLK 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,530
Number of Sequences: 5004
Number of extensions: 56258
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)