Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B15
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 33 0.19
02_05_0294 + 27609656-27611305 31 0.59
08_02_1468 - 27338052-27339506 31 0.78
09_06_0008 - 20168429-20170054 31 1.0
04_04_0853 + 28745953-28747635 30 1.4
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 30 1.8
03_02_0251 - 6821612-6823405,6823738-6823878 29 2.4
07_01_0975 + 8223269-8224354 29 3.2
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 29 3.2
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 29 4.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 4.2
08_02_0116 + 12762009-12763021,12763421-12763436 28 5.5
06_01_0783 + 5857950-5857979,5859474-5860424 28 5.5
06_03_0454 - 20968052-20969758 27 9.7
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 27 9.7
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 27 9.7
>10_08_0674 + 19788198-19789817
Length = 539
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 357
W+WYE+ + CGL ++ RATV + + I T
Sbjct: 296 WWWYEIMILLCGLLANPRATVASMGILIQTT 326
>02_05_0294 + 27609656-27611305
Length = 549
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 357
W+WYE+ + CGL ++ +ATV + + I T
Sbjct: 323 WWWYEIMILLCGLLANPQATVASMGILIQTT 353
>08_02_1468 - 27338052-27339506
Length = 484
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 357
W+WYE+ + CG+ +D +A V + + I T
Sbjct: 244 WWWYEIMVLLCGVLADPKAAVAAMGILIQTT 274
>09_06_0008 - 20168429-20170054
Length = 541
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 357
W+WYE+ + CG+ +D +A V + + I T
Sbjct: 297 WWWYEIMVLLCGVLADPKAAVAAMGVLIQTT 327
>04_04_0853 + 28745953-28747635
Length = 560
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 357
W+WYE+ + CGL + +ATV + + I T
Sbjct: 322 WWWYEIMILLCGLLLNPQATVASMGILIQTT 352
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 331 QESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRF 480
+ES A+V + S++ PG A + P DT P SIP RF
Sbjct: 156 KESILAAVRLLR-SSISPGNAAAAAAPDADAATDTDTDAAPPSIPTQTRF 204
>03_02_0251 - 6821612-6823405,6823738-6823878
Length = 644
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 357
W+WYE+ V GL ++ RATV + + I T
Sbjct: 292 WWWYELMIVLSGLLANPRATVASMGILIQAT 322
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 3.2
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Frame = +1
Query: 328 FQESSFASVPV--YDISNVRPGTVALQSLPSPQLTADTSY-------QYQPLSIPAYNRF 480
++ SS A+ P S+V G+ + S P P + DT Y P S P+ +
Sbjct: 198 YESSSAAAAPAPSESDSDVGSGSGSAASAPGPSPSDDTGYGGSSGSPSSSPSSSPSSSPS 257
Query: 481 GGDPSYSTNSVSGSSAGLMSLKGGYT 558
G S + S SGS AG S GG T
Sbjct: 258 GSPSSSPSGSPSGSPAG--SPAGGPT 281
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 481 GGDPSYSTNSVSGSSAGLMSLKGGYTGHIYLKSIRRRPVPPVK-WPSSTPLTTPGR 645
GGD +T + GSSAG+ + K + +L + + P + P PLT +
Sbjct: 82 GGDDDKATEGIRGSSAGMYTDKRSVSEDTHLYPSTKPTIKPARPQPQMHPLTAAAK 137
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 458 DNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYTGTDANEDS 333
DN Y +E N +G+ C+AT + SY G + E+S
Sbjct: 109 DNCPYLHEPLTSNDAVGTSCKATTSNPAVSKSYVGDEMVEES 150
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 4.2
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +1
Query: 229 ALKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSL 408
+L Y +P+ S N T++ A S P++ +S P Y S P S
Sbjct: 1666 SLSYSPTSPVYSPTSPVYNPTSS--AYSPTSPSYNPTS----PSYSYSPTSPS----YSP 1715
Query: 409 PSPQLT-ADTSYQYQPLSIPAYNRFGGDPSYSTNSVSGS 522
SP + + TS Y P S P+YN PSYS S S S
Sbjct: 1716 TSPSYSYSPTSPSYSPTS-PSYNYSPTSPSYSPTSPSYS 1753
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 349 SVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNS 510
S P Y+ S+V+ S SP + TS Y P S P+Y++ PSYS S
Sbjct: 1804 SSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSPTS-PSYSQ--PSPSYSPTS 1854
>08_02_0116 + 12762009-12763021,12763421-12763436
Length = 342
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 402 LQSYGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFIWFHYY 268
LQ S + +G I++ D C+ LK + + C R + FH +
Sbjct: 192 LQLQSSLNTLGYIMFDDSCELNCLKDKIFAHSDLPCSRNVIFHIF 236
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 565 IYLKSIRRRPVPPVKWPSSTPLTTPGR 645
I+ S R P PVK S+ P TTPG+
Sbjct: 238 IFKSSPARHPDSPVKKASARPTTTPGK 264
>06_03_0454 - 20968052-20969758
Length = 568
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 449 WYWYEVSAVNCGLGSDCRATVPGL 378
W+WYEV + CGL + R V +
Sbjct: 318 WWWYEVMILLCGLLPEPRPAVASM 341
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 292 NAVNAESVDKPAFQESSFASVPVYDISNVR-PGTVALQSLPS 414
N ++ + P + + F S VYDI NVR G V + PS
Sbjct: 918 NGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPS 959
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 26 VLDDGYTRRHFYRNGDLQFLVKNMKTSHWSVSGRI 130
VL+D + + H R DL + K W VSG I
Sbjct: 329 VLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHI 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,734
Number of Sequences: 37544
Number of extensions: 373147
Number of successful extensions: 962
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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