Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B14
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0006 + 8455219-8457469,8457560-8457924                           29   3.1  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   4.1  
12_02_0412 - 18799217-18801061                                         28   5.4  
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197...    28   5.4  
12_02_0591 + 20864861-20867329                                         27   9.4  
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    27   9.4  
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315...    27   9.4  

>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 193 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 20
           F  P +V+L  N G+C ++ +   P   SS  PA    +  LL+K    I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 326
           A  N P +A   N N   G ++Y+F DK G
Sbjct: 385 AESNTPALARTSNLNEELGQVEYIFSDKTG 414


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 302 VYSATDSVEVGYISDIWHISGGESLRCDVV 213
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>02_04_0519 +
           23619084-23619198,23619468-23619559,23619655-23619735,
           23620426-23620501,23620674-23620696
          Length = 128

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 271 GTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAV 173
           G LA+  IF +     ++ W S+W+ FT  A +
Sbjct: 63  GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95


>12_02_0591 + 20864861-20867329
          Length = 822

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 185 AGSCHLVSEPGDVCIRETY 129
           AG CHL  EPG V +R  +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317


>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = -3

Query: 434 GVEIDRGVRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNL-IFEHIVYSATDSV-EVGYIS 261
           GVE+  GV+ LE    +V+ V+ T +  R+       +L +   ++Y A D + E+ Y  
Sbjct: 34  GVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVLRELLYDAEDVMDELDYYR 93

Query: 260 DIWHISGGESLRCDVVVIVVEEIHFAGS 177
               I  GE   C        E  +A S
Sbjct: 94  LQQQIEKGEG--CSAAAANYPEASYASS 119


>08_02_1455 +
           27230134-27231110,27231195-27231327,27231417-27231501,
           27233372-27233571
          Length = 464

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 160 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIA 41
           +PG    V  +P P  LSSA  A AA S+  L  S  P A
Sbjct: 17  SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,957
Number of Sequences: 37544
Number of extensions: 355441
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)