Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B13
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.6  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   8.0  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 177  MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 290
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 682 CILGFTLSACFISRTRAVKPSLCSDSXSSTGVVPNVFL 569
           CI GF ++  + +RTR + PS    + S T V+   FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 420 PIKDCTSVDLQCRHHLPLSR 361
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 682 CILGFTLSACFISRTRAVKPSLCSDSXSSTGVVPNVFL 569
           CI GF ++  + +RTR + PS    + S + V+   FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 429 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 518
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,715
Number of Sequences: 5004
Number of extensions: 51548
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)