Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B13
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 45 5e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.008
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 1.6
10_08_0009 + 14075929-14076789 29 3.6
03_02_0517 + 9054816-9055655 29 3.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 4.8
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 28 8.4
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 28 8.4
05_03_0086 + 8279518-8280320,8280923-8281844 28 8.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +3
Query: 207 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDD 386
S +HL Y S I +T V+ + + +N+ + ++ L++G D+
Sbjct: 62 SLYSHLYYSSLSID-ETRCAVAPPSSGEESSILSNFSSSIKSSGGGFAVKTILSIGTDEF 120
Query: 387 TEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 515
ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 121 REDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 393 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 515
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 447 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 560
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>10_08_0009 + 14075929-14076789
Length = 286
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 294 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 464
D A+ + A+ K P L V L +GGD T N + A+ +A
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119
Query: 465 -LAEQYGFDGIDLSWQ 509
L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 160 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 294
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +3
Query: 336 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 515
R P L + + D D +YNLL + A +Y FDG L L
Sbjct: 5215 RMSPILNMVIEPSFDFDDPPTHQYNLLEPTSIITRKHVLGAHTWDHEYNFDGASLEKTLV 5274
Query: 516 KRKPKK-IRSSIGSFWHSIKKT 578
KP K +++ F +KK+
Sbjct: 5275 LHKPTKCFEATLVEFSKDMKKS 5296
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 636 LVREMKQALNVKPNMQLVISVLP 704
LVR+ K + K NMQL++ +LP
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLP 362
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 225 LYKSAGIQADTYKMVSLNENLDIDRAHANYR-AITNLKRQFPQLRVFLTVGGDDDTE--D 395
L + Q Y+++S+NE D A YR AI N Q ++ V + E
Sbjct: 3 LSSNISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFS 62
Query: 396 PQKYNLLLESPQARTAF 446
QK +L P++RT +
Sbjct: 63 VQKAWEVLRDPKSRTEY 79
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 411 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGT 587
LL++ P R AFT A + + FDG+ +W L + P + + F T
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASAT 534
Query: 588 TPVDDXESEH 617
TP D E+
Sbjct: 535 TPKDKKPPEN 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,505,943
Number of Sequences: 37544
Number of extensions: 342986
Number of successful extensions: 955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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