Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B12
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.18
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 29 0.72
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 28 0.95
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 28 1.3
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 1.7
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.9
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 27 2.9
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 3.8
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 26 3.8
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 3.8
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 26 5.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 6.7
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 6.7
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 6.7
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 8.9
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 8.9
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.18
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 5 NKNAALSNRCRELERQLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISLD 184
NK +L + E +RQL+ + EDL + E+EL LR + Q ++ L + L+
Sbjct: 488 NKLTSLQEQNNEFDRQLKEQE----EDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLE 543
Query: 185 LE 190
LE
Sbjct: 544 LE 545
>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 28.7 bits (61), Expect = 0.72
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 401 DYSVTASAKGDLEV-AEACPDGQFVK-IRN-KGKKELSLGGYSILRKAGDQETVFKFHRT 571
D+S++ SA D + A + F K I+N K +++ YSI AG T+F F
Sbjct: 44 DHSISDSALSDSDKNAFKDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGHGTLFDFPSA 103
Query: 572 VKLEPGA 592
L GA
Sbjct: 104 TNLHKGA 110
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 0.95
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +2
Query: 20 LSNRCRELERQLESERARHAEDLASLEQELARLRDEM----AAQLREYATLMD 166
L+N+ +LE +LES +A H E+L L + + D++ A++ +EY L +
Sbjct: 213 LTNQ-HQLEIELESTKASHTENLGELTRNWQKAMDDVTEKFASKSKEYEDLQN 264
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 38 ELERQLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISLDLEIATYRALIE 217
ELE +LES R + L L EL R RDE + T + + + E+ A E
Sbjct: 34 ELEAELESIRNGTCKTLLDLADELRRSRDEELEIAERWRTFLVNRAQEEYEVEMKAAKEE 93
Query: 218 GE 223
E
Sbjct: 94 YE 95
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 50 QLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISL 181
QLE ER + + + SLE++L D Q Y TL D + +L
Sbjct: 525 QLEEERKKLLDQIYSLEKQLLEY-DSQFTQANTYDTLNDPRATL 567
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +2
Query: 77 AEDLASLEQELARLRDEMAAQLREYATLMDIKISLDLEIATYRALIEGE 223
A L + ++++ ++ +EM+ + Y T+ D+K + + Y L+EG+
Sbjct: 259 AYSLKAAQRKVDKILEEMSPEDDSYVTVSDLKSLIASLLTQYDHLLEGD 307
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 411 SPRAPRGISRWPKPAPTDSSS-RLGT 485
+P P G+ P PAPT S S RLG+
Sbjct: 318 APFQPAGVGSVPLPAPTSSQSLRLGS 343
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 365 TLLDESEERSVQD-YSVTASAKGDLEVAEACPDGQFVKIRNKGKKE 499
TL E++E + + Y + S +GD + + +G+ K+R+KG+++
Sbjct: 532 TLSTENKENLIINVYLIPISDEGDETLKKYFSEGEIQKVRSKGQED 577
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 353 ARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRNKGKKEL 502
A K +E + + + + A A LE+ PDG + + N K +L
Sbjct: 297 AEKHNYYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANFSKLKL 346
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 514 PAEAEFLLALVPNLDELSVGAGFGHLEIPLGARGD 410
PA+ EFL+AL D++ + ++ LG GD
Sbjct: 240 PAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD 274
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +2
Query: 2 ENKNAALS---NRCRELERQLESERARHAED--LASLEQELARLRDEMAAQLREYATLMD 166
E+ N A+ NR ELE QLE + +ED L SL+QE +++ TLM
Sbjct: 217 ESSNRAIETYENRIAELEAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVDTLMK 276
Query: 167 IKISLDLEIATYRALIEGEEDRLNLTTQSPGR 262
K + + N + +SP R
Sbjct: 277 QKANSSTANEKLSHMESSSPTLTNASFESPKR 308
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 50 QLESERARHAEDLASLEQELARLRDEMAAQLREYATL 160
+++ E D+AS++ E+A ++ EMA + A++
Sbjct: 149 EMKGEMTVMKNDIASIKGEMAEMKGEMAVMKNDIASI 185
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 5 NKNAALSNRCRELERQLESERARHAE--DLASLEQEL 109
++N ALS R RELE +L ++++ E +LE++L
Sbjct: 54 HRNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKL 90
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/67 (20%), Positives = 33/67 (49%)
Frame = +2
Query: 23 SNRCRELERQLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISLDLEIATY 202
++ +++ +LES ++ L + EQE + R+ +A + + K++ + E+
Sbjct: 918 ASHLKQVSYRLESRLFEISKQLDNSEQENNKFRERIAELESHLSNYAEAKLAQERELEQT 977
Query: 203 RALIEGE 223
R LI +
Sbjct: 978 RVLISDQ 984
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.4 bits (53), Expect = 6.7
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 2 ENKNAALSNRCRELERQLESERARHAEDLA---SLEQELARLRDEMAAQLREYATL 160
EN+ A +R +E+E LES+ R ++ LA S+ + L D+ + RE A L
Sbjct: 424 ENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKL 479
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 395 VQDYSVTASAKGDLEVAEACPDGQFVKIRNKGKKELSLGGYSILRKA 535
+Q+Y + K D + + P +F K R KG LSL I R A
Sbjct: 41 LQEYLDKEAWKDDTLIIDLRPVSEFSKSRIKGSVNLSLPATLIKRPA 87
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 574 HSAVELEHRLLVTRLAEDRIPAEAEFLLALVP 479
H+AVE R L IPAE+EF L VP
Sbjct: 693 HTAVE-SPRSSFEELQPSEIPAESEFTLENVP 723
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,607
Number of Sequences: 5004
Number of extensions: 18801
Number of successful extensions: 121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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