Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B10
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    24   2.4  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    23   5.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    23   7.2  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    22   9.6  

>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 143 HTLAQFGKLAVKFGLFGLLRFIIRHCGCVD 54
           H LA     A   G   + RF+++HC  +D
Sbjct: 32  HVLAIVKANAYGHGAVQVARFLLKHCSSID 61


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 70  IVVVLIYGVLR*EKEDGPIRWFS 2
           I+   I+ +L   +  GP++WFS
Sbjct: 132 ILTTAIFSILLLHRRLGPMKWFS 154


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 93  PSSLHHPPLWLC*FTVSY 40
           P S HHP  WL  + +S+
Sbjct: 704 PVSFHHPLHWLLVYLLSF 721


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 80  IIRHCGCVDLRCPTVRK 30
           I+ HCGC  L  P VRK
Sbjct: 257 ILAHCGCFSLLKP-VRK 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,627
Number of Sequences: 5004
Number of extensions: 6628
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)