Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B10
         (149 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901...    26   3.6  
03_05_0213 - 22037268-22039496                                         26   3.6  

>10_08_0132 +
           15087274-15087797,15089544-15089732,15090048-15090186,
           15090454-15090594,15091420-15091569,15091908-15092011,
           15092258-15092432,15092714-15092823,15092906-15093073,
           15093180-15093345,15093771-15094049,15094445-15094543,
           15094619-15094676,15095145-15095336,15095693-15095724,
           15096023-15096117,15096321-15096426
          Length = 908

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 131 QFGKLAVKFGLFGLLRFIIRHCGCVDLRCPTVRKRRWPYKMV 6
           Q GK   + G FG LRF+ RH G    R    R  R P+++V
Sbjct: 284 QGGKPQQQRGEFGRLRFLPRHAGVARRR--RRRGGRSPFRLV 323


>03_05_0213 - 22037268-22039496
          Length = 742

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 147 PPYACAIRQACGQIRPVWPSSLHHP 73
           PP  C      G +RP W +S H P
Sbjct: 11  PPPPCPCHVGVGPLRPRWRASRHGP 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,972,566
Number of Sequences: 37544
Number of extensions: 53212
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)