Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B10
         (149 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.14 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              19   5.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   7.1  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.14
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 141 YACAIRQACGQIRPVWPSSLHHPPLWLC*FT-VSYGKKKKMAL 16
           Y+C  R    ++       +H PP W+   T VS  + K +AL
Sbjct: 683 YSCVARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVERNKHVAL 725


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 34  EKEDGPIRWFS 2
           E++DGP +W S
Sbjct: 73  EEDDGPYKWIS 83


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = +1

Query: 25   LLFLTVGHRKSTQPQW 72
            +++  V H+K  Q +W
Sbjct: 1491 MIYFVVEHKKKNQQEW 1506



 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/27 (25%), Positives = 11/27 (40%)
 Frame = -3

Query: 141 YACAIRQACGQIRPVWPSSLHHPPLWL 61
           Y C    A G        +++ PP W+
Sbjct: 656 YVCTAENAAGTASHSTTLTVNVPPRWI 682


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 141 YACAIRQACGQIRPVWPSSLHHPPLWLC*FT-VSYGKKKKMAL 16
           Y C       ++R      +  PP W+   T VS  + K +AL
Sbjct: 687 YTCVAANPAAEVRYTAKLQVKVPPRWIVEPTDVSVERNKHVAL 729


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 141 YACAIRQACGQI 106
           Y C I  ACG I
Sbjct: 73  YTCPICGACGDI 84


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -1

Query: 71  HCGCVDLRCPTVRKRRWPY 15
           +CG  D + P  R   +P+
Sbjct: 627 YCGLRDRKYPDARAMGYPF 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,608
Number of Sequences: 438
Number of extensions: 513
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)