Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B09
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    86   1e-18
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    83   1e-17
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   2.9  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   3.8  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    24   8.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.8  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 86.2 bits (204), Expect = 1e-18
 Identities = 38/78 (48%), Positives = 59/78 (75%)
 Frame = -2

Query: 372 KT*YAQHTQVRAIRKKMWKIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVC 193
           KT YAQ +Q+RAIR+KM+++I    +S   RE+V KLIP+ I ++IE+A   I+PL++V 
Sbjct: 152 KTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVL 211

Query: 192 IRKVKVLKSPRFEISKLM 139
           +RKVK+LK+P+ +  KL+
Sbjct: 212 VRKVKILKAPKHDAQKLL 229


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 83.0 bits (196), Expect = 1e-17
 Identities = 37/78 (47%), Positives = 56/78 (71%)
 Frame = -2

Query: 372 KT*YAQHTQVRAIRKKMWKIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVC 193
           KT YAQ +Q+RAI +KM+++I         +E+V KLIP+ I + IEKA + IYPL++V 
Sbjct: 152 KTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVF 211

Query: 192 IRKVKVLKSPRFEISKLM 139
           +RKVK+LK+P+ +  KL+
Sbjct: 212 VRKVKILKAPKHDAQKLL 229


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -2

Query: 318 KIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 187
           + +  D      R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 309 TRDVTSSEFREVVNKLIPDSIAKDIEKACHGIY 211
           T +   S F+E+++ + PD+   DI+   + IY
Sbjct: 29  TIETIVSFFQEIIHSISPDTFQLDIDDILYKIY 61


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 157 KTRALQYFHLPN 192
           K RALQY+HL N
Sbjct: 349 KLRALQYYHLAN 360


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 78  AFLTCLQPLPVYRCRLHRAAPSAWRFQNA 164
           +FLT L      RC LH AA   +R +N+
Sbjct: 209 SFLTPLHEQLESRCALHTAAKDPFRSKNS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,350
Number of Sequences: 5004
Number of extensions: 23536
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)