Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B09
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 87 4e-18
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 87 4e-18
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 85 2e-17
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 30 0.50
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 28 2.0
06_01_0768 + 5742938-5743196,5743291-5744729 27 3.6
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 27 3.6
12_01_0398 - 3143745-3143777,3144045-3144126,3144863-3144975,314... 27 6.2
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 27 6.2
01_01_1007 + 7979642-7980577 27 6.2
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 26 8.2
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080... 26 8.2
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 87.0 bits (206), Expect = 4e-18
Identities = 38/78 (48%), Positives = 60/78 (76%)
Frame = -2
Query: 372 KT*YAQHTQVRAIRKKMWKIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVC 193
+T YAQ +Q+R IR+KM +I+ +S + +E+V+K IP+ I K+IEKA I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVF 211
Query: 192 IRKVKVLKSPRFEISKLM 139
+RKVK+LK+P+F++ KLM
Sbjct: 212 VRKVKILKAPKFDLGKLM 229
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 87.0 bits (206), Expect = 4e-18
Identities = 38/78 (48%), Positives = 60/78 (76%)
Frame = -2
Query: 372 KT*YAQHTQVRAIRKKMWKIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVC 193
+T YAQ +Q+R IR+KM +I+ +S + +E+V+K IP+ I K+IEKA I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVF 211
Query: 192 IRKVKVLKSPRFEISKLM 139
+RKVK+LK+P+F++ KLM
Sbjct: 212 VRKVKILKAPKFDLGKLM 229
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/78 (47%), Positives = 60/78 (76%)
Frame = -2
Query: 372 KT*YAQHTQVRAIRKKMWKIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVC 193
+T YAQ +Q+R IR+KM +I+ ++ + +E+V+K IP+ I K+IEK+ I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVF 211
Query: 192 IRKVKVLKSPRFEISKLM 139
IRKVK+LK+P+F++ KLM
Sbjct: 212 IRKVKILKAPKFDLGKLM 229
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 30.3 bits (65), Expect = 0.50
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 285 FREVVNKLIPDSIAKDIEKACHGIYPLRD 199
F ++VN IPD + + ++K C IY LR+
Sbjct: 32 FFQLVNTGIPDDLLERVKKVCSDIYKLRE 60
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 97 NLSPFTAAAFTVQLHQLGDFKTRALQYFHLPNADITKWV 213
NL A TV H DFK AL Y +PN D+ KW+
Sbjct: 802 NLVKIITACSTVD-HYGNDFK--ALVYEFMPNRDLDKWL 837
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 48 SPEPVVRNPLAFLTCLQPLPVYRCRLHRAA 137
+P+P R ++ CL P Y CR+ R A
Sbjct: 511 TPDPPCRRAVSMEPCLHGPPFYDCRVKRGA 540
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 88 LVSNLSPFTAAAFTVQLHQLGDFKTRALQYFHLPNADITKWVDTVTRLFDILSDGVRNQL 267
L S +SP + + + L G++ T LQ+ D W R+FDI G R +
Sbjct: 411 LTSRMSPSSLRYYGIGLEN-GNY-TVTLQFAEFGIEDTQSWKSLGRRVFDIYVQGERKEK 468
Query: 268 VHDFTK 285
D K
Sbjct: 469 NFDIRK 474
>12_01_0398 -
3143745-3143777,3144045-3144126,3144863-3144975,
3145072-3145152,3145517-3145569,3146042-3146150,
3147512-3147571,3147689-3147771,3147913-3148086,
3148133-3148172
Length = 275
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 163 RALQYFHLPNADITKWVDTVTRLFDILSDG 252
RAL FH PNA I +D +L+D+ G
Sbjct: 139 RALSVFH-PNAPIDDKIDFAFKLYDLKQQG 167
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 94 SNLSPFTAAAFTVQLHQLGDFKTRALQYFHLPNADITKWVDTVTRLFDILSDGVRNQLVH 273
+ LSP + + + L G++ T LQ+ + D W R+FDI G R +
Sbjct: 461 ARLSPSSLRYYGIGLEN-GNY-TVTLQFAEIEFEDTKSWKSLGRRVFDIYIQGERKERNF 518
Query: 274 DFTK 285
D K
Sbjct: 519 DIRK 522
>01_01_1007 + 7979642-7980577
Length = 311
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 45 RSPEPVVRNPLAFLTCLQPLPV 110
R P P+ R PL+ +TC PV
Sbjct: 46 RPPYPIDRTPLSMITCATATPV 67
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 94 SNLSPFTAAAFTVQLHQLGDFKTRALQYFHLPNADITKWVDTVTRLFDILSDGVRNQLVH 273
+ +SP + + + L G++ + LQ+ D W T R+FDI GV +
Sbjct: 395 ARMSPSSLRYYGLGLEN-GNYSVK-LQFAEFAYPDSKTWESTGRRIFDIYVQGVLKEKNF 452
Query: 274 DFTK 285
D K
Sbjct: 453 DIRK 456
>02_02_0609 +
12105616-12106336,12106514-12106646,12107849-12108048,
12108184-12108635,12109018-12109323
Length = 603
Score = 26.2 bits (55), Expect = 8.2
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -2
Query: 348 QVRAIRKKMWKIITRDVTSSEFREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 169
Q+R+I+KK+ +II + VT+ R + + K+ EKA V +K+LK
Sbjct: 502 QIRSIKKKIGRIINKPVTAMSSRRMARFIDEIDTIKE-EKA--------RVFEEIIKILK 552
Query: 168 SPR 160
+PR
Sbjct: 553 NPR 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,755
Number of Sequences: 37544
Number of extensions: 158978
Number of successful extensions: 429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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