Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B07
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 75 8e-15
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.013
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 29 0.65
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 29 0.65
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 27 2.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 3.5
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 25 6.1
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 6.1
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 6.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 6.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 8.1
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 8.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.1
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 8.1
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 8.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.1
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 74.9 bits (176), Expect = 8e-15
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Frame = +1
Query: 1 QPGPNVWGTKLPLGQLLAEFPNXXXXXXXXXXXXXXDDGSKVAWVAHDSSINIADSS--- 171
+P +VWG++LP + AE+P+ G+ +A+ HDSS+ IA S
Sbjct: 183 KPEASVWGSRLPFNTVCAEYPS----GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238
Query: 172 -QGKTVVKLKTEYLPFLGCSWVTNNSLVVAGHSCIPLLYTHEDNEIKFIAKLD------- 327
+ ++ +K LP W +++V AG++ P+L ++ LD
Sbjct: 239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTS 298
Query: 328 -----NT--QRKESGGLS--AMKK-FQSLDRHARIETNDTFLDSIHQNAISCISIYKGTK 477
NT R+E G +S A++ F+++D ++ + L ++HQN I+ + Y GT
Sbjct: 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISS-LPTVHQNMIATLRPYAGTP 357
Query: 478 ANTRKFSTSGLDGQLVIWDI 537
N F++SG DG++V+W +
Sbjct: 358 GNITAFTSSGTDGRVVLWTL 377
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.013
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 112 DGSKVAWVAHDSSINIADSSQGKTVVKLKTEYLPFLGCSWVTNNSLVVA 258
DG +A + DSS+ + D GK + L+ C+W T++ L+V+
Sbjct: 400 DGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVS 448
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 28.7 bits (61), Expect = 0.65
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = +1
Query: 403 ETNDTFLDSIHQNAISCI-----SIYKGT-KANTRKFSTSGLDGQLVIWDIETLEKSFER 564
++ D L I N++S S+ G+ N +T G D +WDI L KSF
Sbjct: 279 DSKDAMLIDIRSNSVSAKLPHSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRN 338
Query: 565 L 567
L
Sbjct: 339 L 339
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 28.7 bits (61), Expect = 0.65
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Frame = +1
Query: 148 SINIADSSQGKT--VVKLKTEYLPFLGCSWVTNNSLVVAGHSCIPLLYTHEDNEIKFIAK 321
SIN++ S+ K+ V+K T P+L ++ +N+ +++ HS P D F
Sbjct: 47 SINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHSIQPSFIGMSD----FAIG 102
Query: 322 LDNTQRKESGGLSAMKKFQSLDRHARIETNDTFLDSIHQNAISCISIYKGTKANTRKFST 501
LD + ++ + FQ L A+ T+ T H++ I+ IY K RK T
Sbjct: 103 LDPSLKRILPEIRFRLDFQHLKSIAKGATS-TIKVVTHRDKITDAKIYYAAKV-YRKTKT 160
Query: 502 S 504
S
Sbjct: 161 S 161
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 415 TFLDSIHQNAISCISIYKGTKANTRKFSTSGLDGQLVIWDIET 543
T D H + +SC+ + F ++G D + +WD+ET
Sbjct: 141 TITDGGHSDWVSCVRF--SPNPDNLTFVSAGWDKAVKVWDLET 181
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 367 KKFQSLDRHARIETNDTFLDSIHQNAISCISIYKGTKANTRK 492
+ +L + + + + + F ++ NA+S I +Y+ TK +K
Sbjct: 382 RSLSALKKSSSLTSENPFQLNVAANAVSTIPVYRTTKTKMKK 423
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 11 PTFGGLSCHWVNYWLNFRILYQVVDGYIAYRFPMTE 118
P FGG+ + Y+ +F + + ++ IA RF M E
Sbjct: 162 PVFGGIVYESLGYYASFGVCFIILLLDIALRFLMIE 197
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 401 LKLTTHSWTPYIRM-LYHASAYTKVRKPTPESSVLQVLM 514
LK HS R+ LY ++Y K+R TPE +L+ LM
Sbjct: 407 LKREEHSLRSLFRLSLYKYTSY-KIRLETPEPGLLRSLM 444
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 475 KANTRKFSTSGLDGQLVIWDIETLEKS 555
K + KF+T G D ++ IW + T E S
Sbjct: 28 KNSLNKFATCGGDSKIRIWQLITSESS 54
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 490 KFSTSGLDGQLVIWDIETLEKSFE 561
+ +T GLDG + IW E + + E
Sbjct: 32 RIATGGLDGTIRIWSTEAINRENE 55
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 229 WVTNNSLVVAGHSCIPLLYTHEDNEIKFIAKLDNTQRKESGGLSAMKKFQSLD 387
WV + L VA C+ L DNE K +R + +K QSLD
Sbjct: 46 WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNERLQLCPKCIVKYHQSLD 98
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 466 KGTKANTRKFSTSGLDGQLVIWDI 537
+G+ TR + G DGQL WDI
Sbjct: 38 QGSAPVTRALYSGGRDGQLFGWDI 61
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 499 TSGLDGQLVIWDIETLEK--SFER 564
+SG DG+ ++W++ET E SF R
Sbjct: 278 SSGKDGRAMVWNVETGESLGSFPR 301
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 430 IHQ-NAISCISIYKGTKANTRKFSTSGLDGQLVIWDIETLEKS 555
IH+ +AIS I I K +K + T G DG + ++ I +EKS
Sbjct: 506 IHEFDAISSIHI-KSSKRDYLLIQTVGRDGYVNLFSIPRVEKS 547
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 481 NTRKFSTSGLDGQLVIWDI 537
N + F++ GLD LV+WD+
Sbjct: 606 NYKTFASVGLDRCLVVWDL 624
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 196 KTEYLPFLGCSWVTNNSLVV--AGHSCIPLLYTHEDNEIKFIAKLDNTQRKE 345
K+ P L C+ V + ++V AG S PLL +DN K I KE
Sbjct: 957 KSLVTPQLLCATVDGSLMIVGDAGMSNTPLLLQLQDNIRKVIPSFGGLSHKE 1008
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,810
Number of Sequences: 5004
Number of extensions: 53482
Number of successful extensions: 176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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