Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B07
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 35 0.041
10_06_0113 - 10903419-10903439,10904452-10904726,10905082-109052... 31 0.89
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 29 3.6
06_03_1016 - 26916978-26917244,26917499-26917642,26917708-269177... 28 4.7
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 28 6.2
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 28 6.2
08_02_0071 - 11910629-11910883,11912716-11913081 27 8.2
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 27 8.2
01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378... 27 8.2
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 35.1 bits (77), Expect = 0.041
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +1
Query: 112 DGSKVAWVAHDSSINIADSSQGKTVVKLKTEYLPFLGCSWVTNNS-LVVAGHSCIPLLYT 288
DG+ +A V D + + D S+ + + K+ Y L C+W ++ L+ G + +++
Sbjct: 350 DGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGGEDDLVQVWS 409
Query: 289 HEDNEIKFIAKLDNTQRKESGGLSAMKKFQSLDRHARIETNDTFLDSIHQNAISCISIYK 468
+D +I + N+ + L+ KK I + + + ++
Sbjct: 410 MDDRKIVAWGEGHNSWVQ----LNLPKKLSMPRCFLSIVVIEDKVSGVSFDSYWSPPNSD 465
Query: 469 GTKANT-RKFSTSGLDGQLVIWDI 537
GT NT +F + G D QL++WD+
Sbjct: 466 GTGENTVYRFGSVGQDTQLLLWDL 489
>10_06_0113 -
10903419-10903439,10904452-10904726,10905082-10905247,
10905622-10905766,10905837-10905896,10905979-10906028
Length = 238
Score = 30.7 bits (66), Expect = 0.89
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 220 GCSWVTNNSLVVAGHSC-IPLLYTHEDNEIKFIAKLDNTQRKESGGLSAMKKFQSLDRHA 396
G W SL G C P++Y E++ K+ +GG+S+M+ D H
Sbjct: 51 GFHWDHRKSLNYVGKRCGNPMIYATENSNASVPPKMTTF----AGGVSSMQAHGPTDHHI 106
Query: 397 RIETNDTFLDSIHQNAISC 453
D F S++Q + C
Sbjct: 107 HPPFKDGFGPSMNQTSFFC 125
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 481 NTRKFSTSGLDGQLVIWDIETLEKSFERLK 570
N R T+GLD Q++IWD+++ ++ ER K
Sbjct: 260 NGRYLVTAGLDKQVLIWDVKS-KQDVERQK 288
>06_03_1016 -
26916978-26917244,26917499-26917642,26917708-26917783,
26917875-26918010,26918332-26918473,26920020-26920035,
26920222-26920574
Length = 377
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/102 (24%), Positives = 49/102 (48%)
Frame = +1
Query: 241 NSLVVAGHSCIPLLYTHEDNEIKFIAKLDNTQRKESGGLSAMKKFQSLDRHARIETNDTF 420
+SL+ A S P L + E K I ++ +ES S +K L + +E+ +
Sbjct: 192 DSLLEAERS--PRLRGTKSTETKRIRRM--VSNRESARRSRRRKQAQL---SELESQQSI 244
Query: 421 LDSIHQNAISCISIYKGTKANTRKFSTSGLDGQLVIWDIETL 546
D + Q S++K ++++F+T+ D +++ D+E L
Sbjct: 245 YDQVEQLKGENSSLFKQLTESSQQFNTAVTDNRILKSDVEAL 286
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 200 LNICHSWDAVGSP 238
L+ CH WDA GSP
Sbjct: 169 LDFCHCWDAAGSP 181
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 112 DGSKVAWVAHDSSINIADSSQGKTVVKLKTEYLPFLGCSWVTNNSLVVAGH 264
DG +A + S IADS GK + +LK +W + +V G+
Sbjct: 273 DGKLLAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAWHPDGRVVATGN 323
>08_02_0071 - 11910629-11910883,11912716-11913081
Length = 206
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 113 SSENDTLCTHPPPDTEFGNSANN*PNGNLVPQTLGPG 3
SS ND+LC H D E G N P G LG G
Sbjct: 6 SSSNDSLCRHHAEDIEEGEICN--PGGGDGCYVLGSG 40
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 358 SAMKKFQSLDRHARIETNDTFLDSI-HQNAISCISIYKGTKANTRKFSTSGLDGQLVIWD 534
S K+ + DR + + D F + H+ ++ + + +K + + FS S DG +V WD
Sbjct: 133 SGRKRMELADRILQPDPEDGFKMLVKHRQPVTAVVL---SKDSDKGFSASK-DGVIVHWD 188
Query: 535 IET 543
+ET
Sbjct: 189 VET 191
>01_05_0103 -
18137176-18137283,18137375-18137440,18137592-18137828,
18137914-18138159,18138483-18138686,18138781-18138852
Length = 310
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 277 LLYTHEDNEIKFIAKLDNTQRKESGGLSAMKKF 375
L + DN +K+ K DN + ESGG ++++ F
Sbjct: 50 LFHLKRDNAVKYSKKNDNIRPFESGGETSLEFF 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,037
Number of Sequences: 37544
Number of extensions: 330338
Number of successful extensions: 829
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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