Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B06
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 145 2e-35
10_08_0951 - 21769342-21769752 145 3e-35
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 30 1.4
10_02_0059 + 4785858-4786988 30 1.8
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 30 1.8
09_02_0555 - 10588685-10592038 30 1.8
03_02_1029 - 13488535-13493037 30 1.8
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 30 1.8
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 4.1
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 29 4.1
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 4.1
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 29 4.1
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 29 4.1
08_01_0775 - 7531397-7531564,7531590-7532771 28 5.5
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 7.2
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 28 7.2
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 27 9.6
11_02_0012 - 7346282-7347136,7347234-7347593 27 9.6
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 27 9.6
>02_02_0470 - 10700092-10700505
Length = 137
Score = 145 bits (352), Expect = 2e-35
Identities = 67/137 (48%), Positives = 97/137 (70%), Gaps = 3/137 (2%)
Frame = +2
Query: 2 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 181
M K +KPGK V++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 182 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKR-KKLRF--NTRVRFE 352
K K+S++K F+K VN+ H+MPTRY++D F+ ++ A R KK+ + R E
Sbjct: 61 KTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLE 120
Query: 353 ERYKSGKNKWFFQKLRF 403
ER+K+GKN+WFF KLRF
Sbjct: 121 ERFKTGKNRWFFTKLRF 137
>10_08_0951 - 21769342-21769752
Length = 136
Score = 145 bits (351), Expect = 3e-35
Identities = 64/136 (47%), Positives = 97/136 (71%), Gaps = 2/136 (1%)
Frame = +2
Query: 2 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 181
M K +KPGK V++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 182 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRF--NTRVRFEE 355
K K+S++K F+K VN+ HLMPTRY++D ++ +A + KK+ + + R E+
Sbjct: 61 KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED 120
Query: 356 RYKSGKNKWFFQKLRF 403
R+K+GKN+WFF KLRF
Sbjct: 121 RFKTGKNRWFFTKLRF 136
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 357 LSSKRTLVLKRSFLRLAGSFRSFALNFSKL 268
L +++ RSFL LAG +R F NFSK+
Sbjct: 495 LKQPKSVTQVRSFLGLAGYYRRFIKNFSKI 524
>10_02_0059 + 4785858-4786988
Length = 376
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 345 RTLVLKRSFLRLAGSFRSFALNFSKL 268
+T+ RSFL LAG +R F NFSK+
Sbjct: 218 KTVTQIRSFLGLAGYYRRFIENFSKI 243
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 345 RTLVLKRSFLRLAGSFRSFALNFSKL 268
+T+ RSFL LAG +R F NFSK+
Sbjct: 275 KTVTQIRSFLGLAGYYRRFIENFSKI 300
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 345 RTLVLKRSFLRLAGSFRSFALNFSKL 268
+T+ RSFL LAG +R F NFSK+
Sbjct: 405 KTVTQIRSFLGLAGYYRRFIENFSKI 430
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 345 RTLVLKRSFLRLAGSFRSFALNFSKL 268
+T+ RSFL LAG +R F NFSK+
Sbjct: 788 KTVTQIRSFLGLAGYYRRFIENFSKI 813
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 20 PGKVVLVLSGRYAGRKAIVVKNYDEG 97
PG V+++L+GRY G++ + +K G
Sbjct: 77 PGTVLILLAGRYMGKRVVFLKQLKSG 102
>10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 327 RSFLRLAGSFRSFALNFSKL 268
RSFL LAG +R F NFSK+
Sbjct: 954 RSFLGLAGYYRRFIENFSKI 973
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 327 RSFLRLAGSFRSFALNFSKL 268
RSFL LAG +R F NFSK+
Sbjct: 453 RSFLGLAGYYRRFIENFSKI 472
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 327 RSFLRLAGSFRSFALNFSKL 268
RSFL LAG +R F NFSK+
Sbjct: 985 RSFLGLAGYYRRFIENFSKI 1004
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 327 RSFLRLAGSFRSFALNFSKL 268
RSFL LAG +R F NFSK+
Sbjct: 1071 RSFLGLAGYYRRFIENFSKI 1090
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 2 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 97
M + PG V+++L+GR+ G++ + +K G
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 345 RTLVLKRSFLRLAGSFRSFALNFSKL 268
+T+ R FL LAG +R F NFSK+
Sbjct: 84 KTVTQVRRFLGLAGYYRRFIENFSKI 109
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 41 LSGRYAGRKAIVVKNYDEGTSD-KPYGHAFVAGIDRYPRKVHKRMGKNKI 187
L R AG + ++ + GT D G V G+D R+VH G +
Sbjct: 599 LEHRMAGVYTVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAV 648
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 345 RTLVLKRSFLRLAGSFRSFALNFSKL 268
+T+ RSFL LAG +R F NFS++
Sbjct: 635 KTVSQIRSFLGLAGYYRRFIENFSRI 660
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 489 CKQTFISIINKK-NVYDCFKINDSVSKVL 572
CKQTF+ + KK + Y FKI+D +V+
Sbjct: 20 CKQTFLELQRKKSHRYVIFKIDDKCKEVV 48
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -1
Query: 643 DHPFAYFMLYE--DKIIFAG 590
DHPFA+F++ E D ++FAG
Sbjct: 376 DHPFAFFVVEEKSDAVLFAG 395
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 136 HRQIPAQGS*KDGKK*NSQAVENQAFRKRCKLQSSN 243
H+Q + GS DG NS + N+A +KR K+ SS+
Sbjct: 418 HQQAQSIGSMLDGSIPNSFGLANRASKKRKKIVSSS 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,298
Number of Sequences: 37544
Number of extensions: 292229
Number of successful extensions: 792
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -