Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B05
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   3.2  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   4.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.5  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   5.5  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    24   7.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   7.3  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    24   9.7  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    24   9.7  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    24   9.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    24   9.7  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    24   9.7  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    24   9.7  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +1

Query: 133  SRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD-- 306
            S + +++G + +  +GT G    +   G    + S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 307  -NVNGHGATLTKTHIPGFGDKMTAAGKV 387
              +  HG T+   HI   GD MT  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 304 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 393
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 130  NSRVRRQAGALTVNSDGTSGAMVKVPITGNENH-RLSALGSVDLT 261
            NS V +  G+ + +S  T      +PI   ENH  L++ GS  ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 165 CQLRRHLRCYGQGTYNWKR 221
           C ++R L C  Q TYN +R
Sbjct: 186 CTVQRGLECLSQSTYNVER 204


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 174 RRHLRCYGQGTYNWKRKSQAQCPWLR 251
           + HL  YG+ TYN    +  Q  W +
Sbjct: 174 KNHLEVYGRTTYNIVLHNSWQASWFK 199


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 256  LTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKM 369
            +T+  +  A    LA  N+ G  + +  TH+PG G  +
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 8   RCSPSYSSYQFFWSASTAGTCSLKSLVTTL 97
           + + SYS YQ+F SA     C    ++T L
Sbjct: 259 KLTDSYSLYQYFISAPDDLACKCLDMLTLL 288


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 289 AGLAYDNVNGHGATLTKTHIPG 354
           A  A DN+   GA+L   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 23  YSSYQFFWSASTAGTCSL 76
           Y+ +  FW   T G C+L
Sbjct: 126 YTGFALFWGGITVGLCNL 143


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 282 GSQLHLVSEIYGAKGTEPV 226
           GS +H+VSE  G KG++ +
Sbjct: 760 GSDIHIVSEKRGKKGSKVI 778


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 44  WSASTAGTCSLKSLVTTLNNMRISRSSGP 130
           W      T  LKSL    NN+R+   S P
Sbjct: 99  WDPLQLSTARLKSLCLYRNNVRVLNISNP 127


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 126 GQLQGAPASGCTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRS 257
           GQL  +P     NC L+RH        +  + +S++  P  RRS
Sbjct: 21  GQLSTSPPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQGRRS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,331
Number of Sequences: 5004
Number of extensions: 30476
Number of successful extensions: 58
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)