Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B01
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              44   2e-06
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    38   6e-05
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    33   0.003
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
 Frame = +1

Query: 136 LECLIEGNDQGVKYSWQKDGKSFNWQEHNAALR-KDEGSLVFLRP-QASDEGQYQCFAET 309
           L+C++   D  +   W   G+         A +  D  S++ +    A   G+Y C AE 
Sbjct: 603 LQCIVPTGDLPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITARHAGEYVCTAEN 662

Query: 310 PAGVAS-SRVISFR-KTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSG 483
            AG AS S  ++       I  P    +K   +G   +++C + + +PKP +TWKK  + 
Sbjct: 663 AAGTASHSTTLTVNVPPRWILEPT---DKAFAQGSDARVEC-KADGFPKPQVTWKK--AA 716

Query: 484 ADPNADVTD 510
            D   D TD
Sbjct: 717 GDTPGDYTD 725



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 8/164 (4%)
 Frame = +1

Query: 85  LKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRK--DEGSLVF 258
           +K+ P  V F      V+EC   GN Q      + DG +         LR+    G+LVF
Sbjct: 6   VKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRADGSAVG---DVPGLRQVLPNGNLVF 62

Query: 259 LRPQASDEGQ------YQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 420
              +A D  Q      Y C A +PAG   SR ++ R           +++  I G    L
Sbjct: 63  PPFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAIL 122

Query: 421 DCVQPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 552
            CV P+     +          +      D+D +    P G L+
Sbjct: 123 KCVVPSFVADFVKVLSWHTDQGEEFVPGDDYDGKYLVLPSGELH 166



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
 Frame = +1

Query: 94   QPAEVLFKENNPTVLECLIEGNDQGVKYSWQK-----DGKSFNWQEHNAALRKDEGSLVF 258
            +P +  F + +   +EC  +G  +  + +W+K      G   + +  N  +  ++G+L  
Sbjct: 684  EPTDKAFAQGSDARVECKADGFPKP-QVTWKKAAGDTPGDYTDLKLSNPDISVEDGTLSI 742

Query: 259  LRPQASDEGQYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPN 438
               Q ++EG Y C A    G   S VI            K   +T   G P  L C    
Sbjct: 743  NNIQKTNEGYYLCEAVNGIGAGLSAVIFISVQAPPHFEIKLKNQTARRGEPAVLQCEAQG 802

Query: 439  AYPKPL-ITWKKRLSGADPNAD 501
               KP+ I W       DP +D
Sbjct: 803  --EKPIGILWNMNNKRLDPKSD 822



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
 Frame = +1

Query: 94  QPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQA 273
           +P+        P    C + GN      SW KDGK    +E  A LR +         + 
Sbjct: 313 EPSTQTIDFGRPATFTCNVRGNPIKT-VSWLKDGKPLGLEE--AVLRIES-------VKK 362

Query: 274 SDEGQYQCFAETPAGVASSRVISFRKTYLIASPAKTH----EKTPIEGRPFQLDCVQPNA 441
            D+G YQCF        S++  +  K      P +      E+T   G    L CV  + 
Sbjct: 363 EDKGMYQCFVRNDQ--ESAQATAELKLGGRFEPPQIRQAFAEETLQPGPSMFLKCV-ASG 419

Query: 442 YPKPLITWK---KRLSGAD 489
            P P ITW+   KRLS  +
Sbjct: 420 NPTPEITWELDGKRLSNTE 438



 Score = 29.5 bits (63), Expect = 0.027
 Identities = 19/84 (22%), Positives = 32/84 (38%)
 Frame = +1

Query: 220 NAALRKDEGSLVFLRPQASDEGQYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI 399
           N  +R+  G+L+    +  D G+Y C      G  S   +    T  + +  +   +T  
Sbjct: 262 NERVRQVSGTLIIREARVEDSGKYLCIVNNSVGGESVETV-LTVTAPLGAEIEPSTQTID 320

Query: 400 EGRPFQLDCVQPNAYPKPLITWKK 471
            GRP    C      P   ++W K
Sbjct: 321 FGRPATFTC-NVRGNPIKTVSWLK 343



 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 241  EGSLVFLRPQASDEGQYQCFAETPAG 318
            EGSL       +D G+Y C+ E   G
Sbjct: 1328 EGSLFIKEVDRTDAGEYSCYVENTFG 1353



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 588 MSLTSSLVTICEVEVSIRPSCDAAIKVSHISVRISSGQTFLPSNQGFRVSV 436
           +S T   + I E   S+RP   +   ++ +S    +    L   QGF V V
Sbjct: 193 LSATKGRLVITEPVGSVRPKFPSMDNINGLSTESKADLPLLCPAQGFPVPV 243


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
 Frame = +1

Query: 130 TVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDE-GSLVFLRPQASD-EGQYQCFA 303
           T L C +   D  +  SW KDG++    E       D+  S++ +   + D  G Y C A
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCVA 687

Query: 304 ETPAGVAS--SRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPKPLITWKK 471
              A   S   R++       I  P     +     +   L C Q    P P I WKK
Sbjct: 688 RNLAAEVSHTQRLVVHVPPRWIVEPTDVSVE---RNKHVALHC-QAQGVPTPTIVWKK 741



 Score = 29.9 bits (64), Expect = 0.020
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +1

Query: 277 DEGQYQCFAETPAG--VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPK 450
           D G+Y C AE  AG    ++R+  +   Y+   P    + T + G   +L C     YP 
Sbjct: 493 DGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIP----KVTAVAGETLRLKC-PVAGYPI 547

Query: 451 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTN 561
             I W++       N ++ D D R    PDG L  T+
Sbjct: 548 EEIKWER------ANRELPD-DLRQKVLPDGTLVITS 577



 Score = 26.2 bits (55), Expect = 0.25
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 79  PVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVF 258
           PV+ +    V   ++  T L C+ +      +Y W     S      +    +  GS++ 
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQACPTP-EYRWYAQTGSEPMLVLSGPRTRLLGSVLA 296

Query: 259 LRPQA-SDEGQYQCFAETPAGVASSRV 336
           L      D G Y+C A  P G AS+ +
Sbjct: 297 LEAVTLEDNGIYRCSASNPGGEASAEI 323


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
 Frame = +1

Query: 79   PVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKS-F----NWQEHNAALRKDE 243
            P+++    +    E   T   C +   D  +  SW KDG+S F    N    N +     
Sbjct: 611  PIIEPFTFQEGLSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDPY 670

Query: 244  GSLVFLRPQASD-EGQYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI---EGRP 411
             SL+ +   A++  G Y C A  PA    + V    K  +   P    E T +     + 
Sbjct: 671  SSLLSITNLAAEHSGDYTCVAANPA----AEVRYTAKLQVKVPPRWIVEPTDVSVERNKH 726

Query: 412  FQLDCVQPNAYPKPLITWKK 471
              L C Q    P P I WKK
Sbjct: 727  VALHC-QAQGVPTPTIVWKK 745



 Score = 29.9 bits (64), Expect = 0.020
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +1

Query: 277 DEGQYQCFAETPAG--VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPK 450
           D G+Y C AE  AG    ++R+  +   Y+   P    + T + G   +L C     YP 
Sbjct: 493 DGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIP----KVTAVAGETLRLKC-PVAGYPI 547

Query: 451 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTN 561
             I W++       N ++ D D R    PDG L  T+
Sbjct: 548 EEIKWER------ANRELPD-DLRQKVLPDGTLVITS 577



 Score = 26.2 bits (55), Expect = 0.25
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 79  PVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVF 258
           PV+ +    V   ++  T L C+ +      +Y W     S      +    +  GS++ 
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQACPTP-EYRWYAQTGSEPMLVLSGPRTRLLGSVLA 296

Query: 259 LRPQA-SDEGQYQCFAETPAGVASSRV 336
           L      D G Y+C A  P G AS+ +
Sbjct: 297 LEAVTLEDNGIYRCSASNPGGEASAEI 323


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/54 (22%), Positives = 21/54 (38%)
 Frame = +1

Query: 181 WQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETPAGVASSRVIS 342
           W+++G              ++GSL   + Q    G Y C A     V  + V++
Sbjct: 344 WRRNGADLETLNEPEIRVFNDGSLYLTKVQLIHAGNYTCHAVRNQDVVQTHVLT 397


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 292 GIGPRQTLAVSGIPGILHLCG 230
           GIGP++ L   GIP ++ L G
Sbjct: 334 GIGPKEHLRSLGIPVVVDLPG 354


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 329 ELATPAGVSAKHWYWPSSDACGLRNTRDPSSLRRAALC 216
           EL+ P  ++     + SSD C  R  + P+  ++  LC
Sbjct: 154 ELSQPGSLNG----YGSSDGCDARKKKGPTPRQQEELC 187


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 536 LMETSTSQIVTKEDVSDI 589
           LMETS  ++V  EDV  +
Sbjct: 182 LMETSYFKVVVVEDVDSV 199


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 43  IIVGSALPVDKYPVLKDQPAEVLFKENNPT 132
           +++G+   +DK+       A  + K+N PT
Sbjct: 203 VLIGAPNEIDKFYGTPGYTAPEVIKQNRPT 232


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 597 YL*MSLTSSLVTICEVEVSIRPSCDAAIKVSH 502
           +L  SLT S + + E+     P+C    KV H
Sbjct: 382 HLPTSLTKSKMEVMELSDLHHPNCKINRKVHH 413


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 121 SP*RGPRPVGLSAPGIYPREALSPQ 47
           SP   P   G S P +YP    SPQ
Sbjct: 380 SPYGYPIGSGGSFPSLYPMATTSPQ 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,532
Number of Sequences: 438
Number of extensions: 3712
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)