Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A24
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    29   0.38 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.0  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   3.6  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   8.3  

>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 269 LSLEAVT--AGLAYDNVNGHGATLTNTHIPG 355
           L LEAVT  A  A DN+   GA+L + H+PG
Sbjct: 169 LPLEAVTTIAKAAIDNLVSIGASLAHVHVPG 199


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 227 TSSVLLAPLIFLNQLSLEAVTAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLFHND 406
           T + L+AP I L++ ++ A+T  +   ++    ++ T+   P   D L    + +LF ND
Sbjct: 124 TDATLIAPKIGLDRPNINAITIDVDGHSLQNEISSSTDKLSPSQSDALFEQKQDSLFWND 183


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 272 SLEAVTAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNL 394
           S+E++ + L  +N     AT T T   GFGDK + AGK N+
Sbjct: 242 SVESIISNL--ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -1

Query: 514 VLEHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVC 335
           V+ + V ++ +   + N R      +S+  CA   +I+  Q+D  +  + V+  R +  C
Sbjct: 85  VIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYC 144

Query: 334 KSR 326
           KS+
Sbjct: 145 KSK 147


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 457 NAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSIDIVVC---QSSC 287
           N+GH  +S S+ +  + +      ++S       + DVSV  S   S DIV      SS 
Sbjct: 139 NSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSV--STGTSTDIVTLPPPASST 196

Query: 286 NGFQT 272
           + F T
Sbjct: 197 SSFST 201


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 217 NENHKLSALGSVDLP*PIEFGS 282
           +EN KL     VD P PI++GS
Sbjct: 354 DENGKLKVCDDVDNPEPIKYGS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,019
Number of Sequences: 5004
Number of extensions: 49295
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)