Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_A24
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0256 + 21331396-21332268 33 0.17
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 31 0.69
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 29 2.1
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 28 6.4
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 28 6.4
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 6.4
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 28 6.4
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 28 6.4
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 28 6.4
>02_04_0256 + 21331396-21332268
Length = 290
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -2
Query: 165 SESTRLPAHPGVAPLLRLIIILFDVVARLFNEHVPAVDADQENR 34
S + RL AHPG P +RLI++ D +A LF A AD + R
Sbjct: 139 SRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 127 PTAPADHHTVRCSSQALQRARTG 59
PTAP HH++ CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>01_06_1355 + 36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = +2
Query: 215 ATKTTSSVLLAPLIFLNQLSLEAVTAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNL 394
A TT +++LAP ++ L + +AG Y V + + T D TA V+
Sbjct: 764 ANYTTDTLVLAPGHTVDALMVTNASAGSYYMAVQAYDSLSPTTM--AVTDDTTATAIVH- 820
Query: 395 FHNDYHDLSAKAFATKNMPSIPQVPDFNT 481
Y+ S K AT MP++PQ D T
Sbjct: 821 ----YNTTSTKKNATPVMPTMPQSSDSAT 845
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -1
Query: 502 VVQSATNSVEIGNLRNAG---HVLSSESLCAEVMVIIVEQVDFASGGQLV 362
+ Q A+ ++G L G H+ +S+ + A+ + ++ EQ+D+A+ L+
Sbjct: 414 ISQLASTPADVGLLTKKGILVHLENSDEMAAKKLSMLCEQIDYATEDYLI 463
>08_01_0051 -
355392-355450,355507-355634,356271-356425,356883-357012,
357600-357739,358384-358552,360286-360557
Length = 350
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 517 LVLEHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVIIV 398
L L HV+ SA + + GNL VL + L + +I+V
Sbjct: 238 LTLRHVMDSAKQATKSGNLNELSMVLLNNILSVPLGIILV 277
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 43 LVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKV 204
L G+ SR V P + ++ Y D+ EQW R R + L I+ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 17 PSYSSCLFSWSASTAGTCSLKSLATTSNSM 106
PS S C F SAS AGT + ++ T+ +M
Sbjct: 98 PSVSGCSFPASASGAGTSTTPTMGGTTGTM 127
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 17 PSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAG 148
PS+S C F SAS AGT L S + + +S G G G
Sbjct: 101 PSFSGCTFPSSASAAGTTGL-SPGVGTGTGTLSPGGGIGTGTNG 143
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 29 SCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGK 151
SC S S + + +CS + T +S +RSS A G AG+
Sbjct: 480 SCSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGIAGR 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,163
Number of Sequences: 37544
Number of extensions: 368227
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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