Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A24
         (592 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC121186-1|AAI21187.1|  729|Homo sapiens WDR90 protein protein.        30   5.3  
BC121185-1|AAI21186.1|  730|Homo sapiens WDR90 protein protein.        30   5.3  
AF106934-1|AAD31087.1|  873|Homo sapiens vitamin D receptor-inte...    30   5.3  
BC017282-1|AAH17282.1|  860|Homo sapiens THRAP5 protein protein.       29   9.3  
BC011841-1|AAH11841.1|  841|Homo sapiens THRAP5 protein protein.       29   9.3  
BC004554-1|AAH04554.1|  841|Homo sapiens THRAP5 protein protein.       29   9.3  
AK126839-1|BAC86716.1|  190|Homo sapiens protein ( Homo sapiens ...    29   9.3  
AF121228-1|AAD30032.1|  877|Homo sapiens thyroid hormone recepto...    29   9.3  

>BC121186-1|AAI21187.1|  729|Homo sapiens WDR90 protein protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 145 GAPWSCPTAPADHHTVRCSSQALQRARTGC 56
           GA  SCP    +HH ++ +  A ++AR GC
Sbjct: 536 GALRSCPVDLGEHHALQFTDLAFKQARDGC 565


>BC121185-1|AAI21186.1|  730|Homo sapiens WDR90 protein protein.
          Length = 730

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 145 GAPWSCPTAPADHHTVRCSSQALQRARTGC 56
           GA  SCP    +HH ++ +  A ++AR GC
Sbjct: 537 GALRSCPVDLGEHHALQFTDLAFKQARDGC 566


>AF106934-1|AAD31087.1|  873|Homo sapiens vitamin D
           receptor-interacting protein protein.
          Length = 873

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 502 VVQSATNSVEIGNLRNAGHVLSS-ESLCAEVMVIIVEQVDFASGGQLVTETRDVS 341
           +  + +  V +  L+ +G VL+S ESLC     + +  + F  GG +V  T D S
Sbjct: 180 IAVTVSGLVTVSLLKPSGQVLTSTESLCRLRARVALADIAFTGGGNIVVATADGS 234


>BC017282-1|AAH17282.1|  860|Homo sapiens THRAP5 protein protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 502 VVQSATNSVEIGNLRNAGHVLSS-ESLCAEVMVIIVEQVDFASGGQLVTETRDVS 341
           +  + +  V +  L+ +G VL+S ESLC     + +  + F  GG +V  T D S
Sbjct: 180 IAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGS 234


>BC011841-1|AAH11841.1|  841|Homo sapiens THRAP5 protein protein.
          Length = 841

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 502 VVQSATNSVEIGNLRNAGHVLSS-ESLCAEVMVIIVEQVDFASGGQLVTETRDVS 341
           +  + +  V +  L+ +G VL+S ESLC     + +  + F  GG +V  T D S
Sbjct: 180 IAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGS 234


>BC004554-1|AAH04554.1|  841|Homo sapiens THRAP5 protein protein.
          Length = 841

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 502 VVQSATNSVEIGNLRNAGHVLSS-ESLCAEVMVIIVEQVDFASGGQLVTETRDVS 341
           +  + +  V +  L+ +G VL+S ESLC     + +  + F  GG +V  T D S
Sbjct: 180 IAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGS 234


>AK126839-1|BAC86716.1|  190|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44891 fis, clone BRAMY2044686. ).
          Length = 190

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 224 FSLPVIGTLTIAPEVPSELIVRAPAC 147
           FSLPVI    + P +P  + V  PAC
Sbjct: 123 FSLPVISGAGLCPSIPVSISVLGPAC 148


>AF121228-1|AAD30032.1|  877|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP95
           protein.
          Length = 877

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 502 VVQSATNSVEIGNLRNAGHVLSS-ESLCAEVMVIIVEQVDFASGGQLVTETRDVS 341
           +  + +  V +  L+ +G VL+S ESLC     + +  + F  GG +V  T D S
Sbjct: 180 IAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGS 234


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,759,089
Number of Sequences: 237096
Number of extensions: 2018192
Number of successful extensions: 4219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4218
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)