Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A24
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.97 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.97 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 323 GATLTNTHIPGFGDKLTAAGKVNLFHNDYHD 415
           G  +TN      G +  AAG+  LF  DY++
Sbjct: 527 GEVITNEEAEKRGKEYDAAGRTYLFDLDYNE 557


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 590 SVSRPESSRFDRGSLCVRRSLMHQSGP*TCSPIRHQ 483
           +++ PE   F+ GSL + +  +  +G  TC  +R+Q
Sbjct: 353 TLNEPEIRVFNDGSLYLTKVQLIHAGNYTCHAVRNQ 388


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 435 AKAFALRSW*SLWNRLTLPAAVSL 364
           AK  +++ W S W  L  P+A ++
Sbjct: 328 AKTISVQQWNSYWGILGFPSAPTI 351


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 435 AKAFALRSW*SLWNRLTLPAAVSL 364
           AK  +++ W S W  L  P+A ++
Sbjct: 328 AKTISVQQWNSYWGILGFPSAPTI 351


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 481 CWWRIGLHVQGPDWCI 528
           CWW+I   +  P  C+
Sbjct: 489 CWWKICWTITTPAICV 504


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 481 CWWRIGLHVQGPDWCI 528
           CWW+I   +  P  C+
Sbjct: 542 CWWKICWTITTPAICV 557


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 340 HSHPWFR*QADR 375
           H HPWF+    R
Sbjct: 127 HEHPWFKKSVQR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,490
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)