Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A23
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   1.3  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   1.7  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    26   2.9  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    26   2.9  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   2.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   5.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   8.9  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    24   8.9  

>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 380 IESSI*EQDRRLVEDRGSAERKSVQCSP 297
           +ES +  QDR+L   + S ERKS+  SP
Sbjct: 216 LESKLATQDRKLRMQKKSTERKSLLVSP 243


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 249 LTMST*FTMLGTST-LMEQFTLGKTLISPCILGI 151
           LT S+   + GT+T L EQF L + ++ PC L I
Sbjct: 449 LTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKI 482


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 191 VNCSINV-DVPSIVN*VDIVNIQASDYHTPERNPEEAD 301
           ++C  N  D P IV  V  +N+   D  T + NP + D
Sbjct: 62  IHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +2

Query: 155 PNMQGDISVLPNVNCSINVDVPSIVN*VDIVNIQASDYHTPE 280
           PN+ G    LP V C +   +P++      +++  +D+   E
Sbjct: 54  PNVVGTAERLPKVRCVVRARIPTVKGTEIFLHLYKNDFDNKE 95


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 362 EQDRRLVEDRGSAERKSVQCSPPL 291
           E+D ++ +D+  AE K +  +PPL
Sbjct: 231 EEDEKIQKDKAEAESKGLPYTPPL 254


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 194 NCSINVDVPSIVN*VDIVNIQASDYHTPERNPEEADYTAP-IYAPQSRDPLL 346
           +C I  +VP   +     N+Q   +  PE N    D+ AP  Y  ++  PL+
Sbjct: 280 SCGIVNEVPQSYDWDSFRNVQRDRWQRPELNYAVVDFIAPQEYMVRAPQPLV 331


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 170 DISVLPNVNCSINVDVPSIV 229
           D+S +P++  S+ VD PS+V
Sbjct: 586 DVSQIPSLLLSLGVDPPSVV 605


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 149 VIPNMQGDISVLPNVNCSINVDVPSIVN*VDIVNIQASDYHTP-ERNPEE 295
           V+PN  GD+S+   V   + +D+  I+       ++  +   P E +PEE
Sbjct: 472 VVPNKDGDLSI---VKIKVRLDLHGILVVEQAYIVEEQEVEEPVETSPEE 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,733
Number of Sequences: 5004
Number of extensions: 35725
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)