Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_A17
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 33 0.019
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 2.9
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 3.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.9
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 5.1
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.1
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 5.1
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 9.0
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 33.5 bits (73), Expect = 0.019
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = -3
Query: 316 MTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTWRDVGMSHSRLV*KQ*MVNDCHR 137
+++ L+ NY H+TRV GT+ + S + D S + + Q NDC
Sbjct: 675 ISQVNSLLNDYNYNRQSHITRVYSGTDDGS---SVSIFEDTSSSTKQKIFDQPTTNDCDV 731
Query: 136 HRIRIYLLSASVK 98
R R Y SA +K
Sbjct: 732 MRPRQYSYSAGMK 744
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 358 WIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTR 254
W GK +E +K A + S K + W +TR
Sbjct: 304 WTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITR 338
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -3
Query: 409 KPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQG-TEP 233
+PQ S ++ V + +Q E+E+++ KAQ AK V RV++G T P
Sbjct: 636 RPQGSALVKLVDAEELIAAREQKLEEERAKQAKKAQ----AKAEQEKKQVERVMKGKTSP 691
Query: 232 A----AFKQYFS 209
+ FK+Y S
Sbjct: 692 SEMFKMFKEYLS 703
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 445 TALAKPLRQEQLKPQESYILDTVSGNIYVWIGKQS 341
T L K + ++ KP +LD GN W G S
Sbjct: 1760 TRLKKTVTTDKSKPIAGRVLDASDGNSSAWYGNLS 1794
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 228 PSNNTSRPGGTWACHIPDWSRSSK 157
PS+N ++P + C+IP ++ S K
Sbjct: 263 PSSNAAKPSNSEECNIPKFNSSFK 286
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 298 FAGLLSWLQTFPFQSTASRSIRRCSHLQYPGCTTPVVSTV 417
FA L+ + F F + R I HL+ GC + TV
Sbjct: 191 FAFLVGSMSRFNFVMVSDRFIEEIEHLEKSGCDSRQKETV 230
Score = 25.4 bits (53), Expect = 5.1
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 466 SSGKVKATALAKPLRQEQLKPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSA 287
SSG + ++ L ++ +K E Y+L T I +WI +Q EK ++ + S+
Sbjct: 581 SSGLKMSKSVISCLSRKLVKGSE-YLLRTYHEVIRIWISQQEAVIEKRNSVLSNKSCASS 639
Query: 286 K-NYPSWV 266
+ N P+ V
Sbjct: 640 ESNTPASV 647
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 5.1
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Frame = -3
Query: 505 NEEQTVSLSEVSD---SSGKVKATALAKPLRQEQLKPQESYILDTVSGNIYVWIGKQS-- 341
NEEQT L + D SS +++L P E + S W K S
Sbjct: 24 NEEQTNPLESLRDGWASSNSSSSSSLLLPDENEGNEVFGSLKGLVTQSKFGQWANKLSKS 83
Query: 340 --TEKEKSEAMTKAQQTLSAKNYPSWV 266
+ KSE+++K + S PSWV
Sbjct: 84 LQARRRKSESISKPRVYYSVFMAPSWV 110
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 317 GFRLFLFSRLL--PDPYVDVPTYSIQDV 394
G RL +S L PYV VP YSI+ +
Sbjct: 222 GLRLLAYSLLFMYQFPYVSVPIYSIRQM 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,572
Number of Sequences: 5004
Number of extensions: 38682
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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