Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A15
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   2.9  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    25   5.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   6.6  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.6  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   6.6  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   6.6  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   8.7  

>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 199 LRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 98
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 221 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 319
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 134 HNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDK 253
           H N    SA  ++  ++   PQ   F+T G+   + F DK
Sbjct: 244 HRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDK 283


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 56   HGATLTKTHIPGFGDKMTAAGKV 124
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 130
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 33  WLMTT*TDTERPSQKLISLGSVTK*RLPVKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTS 212
           WL+   ++TE P+Q+L +L S++K  +                +   + T  +  KF T+
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTN 251

Query: 213 TLS-VPEWTTCSKI 251
           T     E  +CS +
Sbjct: 252 TAKYANELVSCSML 265


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 208 VRNLRNIWHVFSGEC 164
           + N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 207 TSTLSVPEWTTCSKIKLVHLRPPHTPMSLTAT 302
           T+  S    T C K   + L+PP +P+S T +
Sbjct: 150 TNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,796
Number of Sequences: 5004
Number of extensions: 42460
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)