Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A14
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    26   3.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.7  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    25   6.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.2  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   8.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.2  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    25   8.2  

>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 178 VLFKNMLPSYTREELDF 228
           +L +N LPSYT EEL F
Sbjct: 176 LLIENPLPSYTSEELKF 192


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -2

Query: 332 ISAWSR*SAFVISMSYSSIKVTIFSDTTRS 243
           +S+  R  +F+++   SS+K+T+F D+ ++
Sbjct: 868 LSSDDRIKSFIVAPDDSSVKITLFDDSQKT 897


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 296 SMSYSSIKVTIFSDTTRSTLTPGKSSSSR 210
           S S+SS  V+  S T+ STLT   SSSSR
Sbjct: 365 SSSFSST-VSSSSSTSSSTLTSSSSSSSR 392


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 434  TQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTL 553
            TQS  Y    +T+ W+ S    T+    S+ +++  NST+
Sbjct: 3866 TQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVSNDFNSTI 3905


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 79  DKYTYVPTALDMYTTCLRDPVFW---KIMKR 162
           DKY   P A D+ T CL +P  +   K++KR
Sbjct: 93  DKYKDRPIARDLGTVCLHNPKLFQGNKLLKR 123


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 259 EKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKV 402
           EK+ T     +  ITN+ Y D  +M+ + SD++        +H+  +V
Sbjct: 194 EKIETSTSVENAYITNSQYNDTLDMEDQTSDLITTFEHENEDHEVHEV 241


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 371 CGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAA 484
           CG++  SL         +RLL  + VY      IAWA+
Sbjct: 203 CGLIANSLFN--DTFSSLRLLDDNSVYTFSTKNIAWAS 238


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 492  AHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERL 388
            A E  +A   G NKY N+ V SLI  N   H   L
Sbjct: 1147 ATEIHYAASVGQNKYLNEYVASLIRTNEKTHSTEL 1181


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 315 VKCIRDIHVIFIHKGDHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHD 163
           VK   D + +F+   ++LF  N    ++ +  F   + R H F+K   V D
Sbjct: 139 VKYWSDFNRLFLDT-EYLFPVNCSELNSSDFSFQLGVERFHDFDKQFNVWD 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,974
Number of Sequences: 5004
Number of extensions: 47875
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)