Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_A11
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.042
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 29 0.23
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 28 0.39
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 0.69
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 0.91
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 2.1
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 24 4.8
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 24 6.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 24 6.4
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 24 6.4
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 23 8.5
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 23 8.5
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 23 8.5
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 23 8.5
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.042
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 118 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENN 237
++GH +T NHF+ +GH +T +N+ NN
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 28.7 bits (61), Expect = 0.23
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 260 IYCLLDFLLFSVFTNFVTIFLEC 192
++CL D+ FS+F+ F+ I LEC
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALEC 233
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.9 bits (59), Expect = 0.39
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 94 NFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 255
N + D + H K + +HFDPS + +K+V+ N K S+ Q
Sbjct: 18 NEEDDDYYSNAHSEKSEDHSNHIK-VSHFDPSSYKQKLVSVRETQRNRKFSSLQ 70
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 0.69
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 315 RQLGNIPSTSHSRVYSPLHLLFIGLFVVLR 226
R+L S S+SR SPLH LF+ L + ++
Sbjct: 766 RRLSMSCSVSYSRSPSPLHALFLALLLGIK 795
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 0.91
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +1
Query: 79 EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS 198
+YD++N DH H H + EA GHS
Sbjct: 21 DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 2.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 201 KDRHEVSEYGEQQKVQ*TIDVTVNKHDYGL*KEYY 305
+D ++E E +++ ++ VN HDY +E++
Sbjct: 54 QDEFSLTENEENNEIETNEEMHVNSHDYAFPQEFF 88
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 4.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 1 LLSSALIVFCTYNLFTNV------TMSEAFFDEYDYYNFDHDKHIFTGHG 132
LL SALI FC+ ++ T+V + + F + + +FDH F G
Sbjct: 108 LLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAAFHSTG 157
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 257 YCLLDFLLFSVFTNFVTIFLECPEGSK 177
Y +LDF F + +T ++E P+G +
Sbjct: 529 YKVLDFHPFDPVSKKITAYVEAPDGQR 555
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 43 FTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKRE 156
FT+ E DE +Y F +DK+I K + R+
Sbjct: 679 FTSKKQEEIPVDELFFYRFFNDKYIKGKQARKTKVDRD 716
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 43 FTNVTMSEAFFDEYDYYNFDHDKHIFTG 126
F+ VT+ +AFFD+ Y F D + TG
Sbjct: 48 FSMVTLKKAFFDK---YIFQPDSVLLTG 72
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 162 RTHESLRPLWTF*KDRHEVSEYGEQ 236
R E++ L +F +DR+EV+ Y E+
Sbjct: 23 REREAVADLLSFLEDRNEVNFYSEE 47
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 1 LLSSALIVFCTYNLFTNV 54
LLS AL +CT NL N+
Sbjct: 392 LLSKALPAWCTINLLGNI 409
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 187 SGHSRKIVTKLVNTEN 234
SGH RK+ K++N E+
Sbjct: 42 SGHQRKLEIKIINIES 57
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 23.4 bits (48), Expect = 8.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 248 LDFLLFSVFTNFVTIFLECPEGSK*FVCSVASRLVRCLPPCP 123
L F +F+ FT+ T+ + P S F V S CP
Sbjct: 4 LRFFIFTFFTSIFTVVVSEPPVSAKFAKRVLSATSSSSSTCP 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,937
Number of Sequences: 5004
Number of extensions: 22587
Number of successful extensions: 65
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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