Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A10
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    29   0.15 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   1.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   1.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   1.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   2.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    24   3.1  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    24   3.1  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    24   3.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    24   3.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    23   5.5  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    23   5.5  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    23   7.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   7.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   9.6  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    23   9.6  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    23   9.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    23   9.6  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    23   9.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   9.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    23   9.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    23   9.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   9.6  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 57  MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 164
           +PPS+  +YP  Y FS  AR  R V   K+I  G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 217 VYPALPNNPSS-FCPSVPNTFP 155
           V P +P +PSS F P  P TFP
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP 327


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 212  SSFTE*SIVILSECTEYFSVAY 147
            S FTE S  + SEC  YF+  +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 238 SSLKNCRVYPALPNNPSSFCPSVPNTFPLP 149
           +S+ +   + A+P  P +F P V N  PLP
Sbjct: 171 ASVSSPNSHNAVPFTPHAFVPPVNNASPLP 200


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 223 CRVYPALPNNPSSFCPSVPNTFP 155
           CRV P LP+  S +C +    FP
Sbjct: 484 CRVRPLLPSEESEYCIADVLQFP 506


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 238 SSLKNCRVYPALP-NNPSSFCPSVPNTFP 155
           S LK C    A P +N  S  PS PN FP
Sbjct: 237 SILKPCMPSIASPTSNRLSHAPSTPNLFP 265


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 54  SMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGK 161
           SM  +Y+ R   +  FSK   H RDV   K  G  K
Sbjct: 145 SMKAAYRIR-KTFLSFSKMMEHVRDVQHKKETGEIK 179


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 256 PSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFP 155
           P N  R + ++ R  P+ PN  ++F  S+ +  P
Sbjct: 77  PRNKSRPASRSDRFIPSRPNTANAFVNSISSDVP 110


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 247 LPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPMFLSHV 131
           +P   L N  +  A+P  P+   P +P  +P+P +  ++
Sbjct: 573 IPSIVLPNSAMPSAMPMYPTPTMPYIPVGYPVPGYTPYM 611



 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 126 DVTWDKNIGNGKVFGTLGQNDDGLF 200
           +V WD+   N K+FG     D+ L+
Sbjct: 143 NVEWDQFATNEKLFGVKSHFDEDLY 167


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 157 EKYSVHSDKMTMDYSVKLDTRGSFSMTIAVS 249
           +KY++H+D+++ +     DT  S S++  +S
Sbjct: 189 QKYAIHNDQVSFNCKKVGDTVASLSLSSRLS 219


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  KERYPEYYKF-------SKQARHPRDVT-WDKNIGNGKVFGTLGQNDDGLFGKAGYTRQF 227
           K+ +P YY F       S++   P  +  WD  I +       G+NDDG  G   +   F
Sbjct: 351 KQIHPTYYSFRWFTCLLSQEFPLPDVIRLWDSIIADQMKARLFGKNDDGFNGAYDFLMDF 410


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 6   LLVLSAAILACVYAQVSMPPSY 71
           L+ LSA ++AC Y ++  P  Y
Sbjct: 240 LVGLSALLIACKYEEIHPPSIY 261


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 30  LACVYAQVSMPPSYKERYPE 89
           L C+ A++ +PP+ +  YP+
Sbjct: 143 LVCLLAEIYVPPANRVWYPD 162


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 238 SSLKNCRVYPALPNNPSSFCPSVPNTFPLPMFLSHVTSL 122
           S ++N R+   +  NP    P  P   P P   + ++SL
Sbjct: 787 SKIENMRIKEVIDGNPFKAPPPAPLPPPAPPLPTAMSSL 825


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 72  KERYPEYYKFSKQ 110
           KE+ PE+YKF +Q
Sbjct: 130 KEKDPEFYKFLEQ 142


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 3   TLLVLSAAILACVYAQVSMPPSYKERYPEYYKFSKQARHPRDVTWDKNIG 152
           TLL      +AC  A V++   +  R  ++YK    A++ RD T  ++ G
Sbjct: 156 TLLFSFVQAVACAEANVTLISPFVGRILDFYK----AKNNRDYTAQEDPG 201


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 6   LLVLSAAILACVYAQVSMPPSYKERYPEY 92
           L  +   I+A ++  V +PP+    +P Y
Sbjct: 292 LFTVCLVIMAHLHVDVQIPPNILSMFPSY 320


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 215 VSSFTE*SIVILSECTEYFSVAYVLVPRDVS 123
           ++S T    VILS+ TEY    Y++  +D +
Sbjct: 1   MASVTSEKCVILSDGTEYDVTNYLVANKDAA 31


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 199 NNPSSFCPSVPNTFPLP 149
           NN  S+ P+ P+T PLP
Sbjct: 114 NNFGSYPPTQPSTQPLP 130


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 132  TWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQF 227
            TW K+ GN       G  D  L  + G+ R +
Sbjct: 1662 TWKKSFGNANTNLKYGLEDMSLSHRRGHKRTY 1693


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 132  TWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQF 227
            TW K+ GN       G  D  L  + G+ R +
Sbjct: 1662 TWKKSFGNANTNLKYGLEDMSLSHRRGHKRTY 1693


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 238 SSLKNCRVYPALPNNPSSFCPSVPNTFPLP 149
           +SL N  +  A+P  PS +    P T P+P
Sbjct: 131 ASLPNAGIPAAMPGMPSGY----PGTVPIP 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,694
Number of Sequences: 5004
Number of extensions: 22009
Number of successful extensions: 71
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)