Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_A10
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 29 0.51
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 29 0.67
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 0.89
02_04_0376 - 22474473-22476947 27 1.6
06_03_0046 - 15852653-15854560 27 2.1
04_04_1339 + 32760424-32760584,32762428-32764462 27 2.1
07_03_1155 - 24413270-24413728 27 2.7
01_06_0930 + 33134385-33138257 27 2.7
04_04_1186 + 31567425-31567438,31568168-31568254,31568335-315684... 26 3.6
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 26 3.6
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020... 26 3.6
11_01_0551 + 4361640-4363386,4363443-4363687 26 4.8
05_01_0450 + 3577928-3579526,3579695-3579832 26 4.8
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 26 4.8
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 26 4.8
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 26 4.8
02_05_0860 - 32296743-32296769,32297328-32297357,32298432-322985... 25 6.3
02_03_0166 + 15887501-15887546,15888968-15889776 25 6.3
07_03_1475 + 26791214-26791490,26793507-26793706,26793866-267945... 25 8.3
02_05_0648 - 30604258-30604677 25 8.3
01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279... 25 8.3
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 51 VSMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 164
+++P S + +Y K Q + PR + W KN+G K+
Sbjct: 644 LTVPASVDQLLSDYAKRFHQIKTPRKLLWKKNLGTVKL 681
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 263 CLPFQLTAIVIEKLPRVSSFTE*SIVILSECTEYFSVA 150
C P +L AI+ +KLP VS + + I EYF ++
Sbjct: 508 CSPKELFAIINDKLPTVSYESYIDVEIQQRAVEYFELS 545
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 28.3 bits (60), Expect = 0.89
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 63 PSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQFFN 233
PSY R F + V +DK I +G G L + D G F A R F+
Sbjct: 579 PSYGYRGRVMLAFEENGSSKIGVRFDKQIPDGNDLGGLCEEDHGFFCSADLLRPDFS 635
>02_04_0376 - 22474473-22476947
Length = 824
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 211 PALPNNPSSFCPSVPNTFPLPM 146
P+LP P+ PS+P + P+P+
Sbjct: 33 PSLPRLPALLTPSLPESLPVPL 54
>06_03_0046 - 15852653-15854560
Length = 635
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 238 SSLKNCRVYPALPNNPSSFCPSVPNTFP 155
S K VYP +P++P + S P FP
Sbjct: 291 SPAKKMAVYPRIPSSPRNTVQSNPQNFP 318
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 57 MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKVFGTLG 179
+PP + ++ F + R +TW N+GN + T G
Sbjct: 511 LPPEIVDISEKFRAFYLGTHNGRRLTWQTNMGNADIKATFG 551
>07_03_1155 - 24413270-24413728
Length = 152
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 256 PSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLP 149
P LP + YPA+P P P P PLP
Sbjct: 97 PEMLPHPVVPELPHYPAVPGFPKHGLPPKPELPPLP 132
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Frame = -3
Query: 250 NLPRSSLKNCRVYPALPNNPSSF--C-----PSVPNTFPLPMFLSHVTSLG*RAC 107
NL +L NC V +LP N F C +VPN LP +TSL C
Sbjct: 805 NLESFTLANCCVIGSLPPNTEIFRHCMTLTLENVPNMKTLPFLPEGLTSLSIEGC 859
>04_04_1186 +
31567425-31567438,31568168-31568254,31568335-31568410,
31568516-31568590,31568678-31568731,31569722-31569781,
31569910-31570026,31570389-31570483,31570603-31570805,
31571224-31571321,31571585-31571688,31571872-31571920,
31571988-31572110,31572566-31572648,31573533-31573674,
31574399-31574428,31574452-31574508,31574545-31574615,
31574715-31575318
Length = 713
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 63 PSYKERYPEYYKFSKQARHPRDVTW-DKNIGNGKVFGTLGQND 188
P KE PE+ ++ ++ P DV D + NG+V G++ Q D
Sbjct: 605 PDVKESPPEFVEWREEEAEPADVPENDTAVPNGEV-GSVDQMD 646
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 105 KQARHPRDVTWDK-NIGNGKVFGTLGQNDDGLFGKAG-YTRQFFNDD 239
K+ R P + +K N+G GKV G + D + G TR+ DD
Sbjct: 453 KRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDD 499
>01_06_0253 -
27901204-27901251,27901673-27901744,27901944-27902030,
27902484-27902574,27903706-27903769,27904354-27904461,
27905124-27905181,27905813-27905956,27906307-27906372,
27907227-27907299,27908439-27908500,27908923-27909000,
27909124-27909229,27909317-27909483,27909961-27910048,
27911204-27911313,27911833-27911928,27912354-27912461,
27912568-27912711,27913850-27914065
Length = 661
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 48 QVSMPPSYKERYPEYY 95
Q PPSY E+YP +Y
Sbjct: 434 QKEPPPSYLEKYPSFY 449
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 183 NDDGLFGKAGYTRQFFNDDRGKLEG 257
+D G G A +Q F+D+ GKL+G
Sbjct: 193 SDGGGGGGAAKNKQTFDDENGKLDG 217
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 30 LACVYAQVSMPPSYKERYPEYYKFSKQARHPRDV 131
L C V + YK R+ K K R P DV
Sbjct: 285 LRCTVTGVDVMGRYKSRFSTMKKLVKDGRRPEDV 318
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 112 PVTLETSRGTRT*ATEKYSVHSDKMTMDYSVK 207
P TLE GT T K+++H D ++ +K
Sbjct: 603 PPTLELGTGTSRGQTFKFTIHQDDCQWNWKLK 634
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 54 SMPPSYKERYPEYYKFSKQARHPRDVTWDKN 146
S PP Y+ YP Y S + HP + D+N
Sbjct: 350 SYPPPYQPSYPPYP--SHPSHHPSQIFSDEN 378
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 253 SNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPMF 143
SN P S V PALP +P ++ V + +P +
Sbjct: 378 SNFPASQAYPAPVQPALPQHPVAYSNGVSSNAIVPYY 414
>02_05_0860 -
32296743-32296769,32297328-32297357,32298432-32298503,
32298967-32299812
Length = 324
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 144 NIGNGKVFGTLGQNDDGLFGKAGYTRQFFNDDRGKLEG 257
++GNG V G +G G R ++ GK+EG
Sbjct: 192 SLGNGLVSGAVGHGGGGAASLVSPVRPVSSNGFGKMEG 229
>02_03_0166 + 15887501-15887546,15888968-15889776
Length = 284
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 180 VRVYRILFRCLCSC 139
V YRI+ CLCSC
Sbjct: 184 VASYRIVMNCLCSC 197
>07_03_1475 +
26791214-26791490,26793507-26793706,26793866-26794507,
26794888-26795038,26795434-26795583,26795675-26795847,
26796088-26796195
Length = 566
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 9 LVLSAAILACVYAQVSMPPSYKERYPEY 92
L+++ A AC +A ++PP +K Y Y
Sbjct: 238 LMMTVAKDACFWASYAVPPFWKPDYRRY 265
>02_05_0648 - 30604258-30604677
Length = 139
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 117 HPRDVTWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQFFNDDRGK 248
HP W+ G+VF + DG A R+F+ + K
Sbjct: 32 HPSFWKWETEPERGRVFRCFDTDGDGRHLSAAEIREFYGCGKAK 75
>01_06_0791 -
32026086-32026944,32027044-32027600,32027686-32027903,
32028171-32028261
Length = 574
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 117 HPRDVTWDKNIGNGKVFGT 173
+PR +T + IG G VFGT
Sbjct: 405 NPRGLTMKQRIGGGLVFGT 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,648,180
Number of Sequences: 37544
Number of extensions: 146392
Number of successful extensions: 409
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -