Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A10
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   2.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   2.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   2.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   3.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   4.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   4.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 104 EASPSP*RRHVGQEHRQRKS 163
           EA P P  +   +EH+++KS
Sbjct: 59  EALPQPISKRKDKEHKKKKS 78


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 104 EASPSP*RRHVGQEHRQRKS 163
           EA P P  +   +EH+++KS
Sbjct: 59  EALPQPISKRKDKEHKKKKS 78


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 210 GYTRQFFNDD 239
           G  RQF+NDD
Sbjct: 223 GIARQFYNDD 232


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 196 NPSSFCPSVPNT 161
           NP +F PS PN+
Sbjct: 59  NPGNFSPSGPNS 70


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 196 NPSSFCPSVPNT 161
           NP +F PS PN+
Sbjct: 59  NPGNFSPSGPNS 70


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 178 DKMTMDYSVKLDTR 219
           D +TM+YSV+L  R
Sbjct: 74  DDVTMEYSVQLTFR 87


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 102 SKQARHPRDVTWDKNIGNGKVFGTLGQND 188
           S +  +  +V  D +  NGK F T+ +ND
Sbjct: 57  SGEYNYKNNVPIDVDRWNGKTFVTILRND 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,545
Number of Sequences: 438
Number of extensions: 1613
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)