Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A06
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   0.89 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   2.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   8.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   8.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 178 LISAIASVICFSTTSNKVTWYPTEANNIAHDLPI 77
           L+     + C   TS  V      ANN+AH + +
Sbjct: 6   LLVVCLGIACQDVTSAAVNHQRKSANNLAHSMKV 39


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 270 NHRYLSHIGTVHPHLDFP 217
           N+ YL++ GTVH  ++FP
Sbjct: 360 NYLYLTYNGTVH-DVEFP 376


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 74  STPNNSNFFRFKLGSHDDTQ 15
           +T + S+FF   +G H D Q
Sbjct: 352 TTASGSSFFLAVMGCHPDIQ 371


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +2

Query: 65  WEWTDREIMGYVVRFSRIPSNFVRCC*EANYR 160
           W W++++++  + +  R+P+     C EA Y+
Sbjct: 840 WNWSNQDVIKSIEKGYRLPAPM--DCPEAIYQ 869


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 247 WNCSSAFRFP 218
           W CSSA  FP
Sbjct: 171 WICSSAISFP 180


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 204 DGLLRGNLNADEQFQCVKGTC 266
           DG+ RG    D   QC   TC
Sbjct: 52  DGMRRGEFPDDHDLQCYT-TC 71


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 312 RPGKFGTQKESIPK 353
           RP  FG+  E++P+
Sbjct: 50  RPSTFGSSNEALPQ 63


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 312 RPGKFGTQKESIPK 353
           RP  FG+  E++P+
Sbjct: 50  RPSTFGSSNEALPQ 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,848
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)