Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A01
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    29   1.7  
12_02_1265 - 27435096-27437675                                         29   2.3  
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           29   2.3  

>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 7   NEPRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPG 183
           + PRA  TGD      I    K+N      R+    N Y      + K+ +  GP +PG
Sbjct: 710 DHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPG 768


>12_02_1265 - 27435096-27437675
          Length = 859

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 10  EPRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQST 165
           EP + +T +HP  P ++ +  + P+ + ARS+S       G +T   + +ST
Sbjct: 99  EPASGNTSNHPRTPQVLGNDYVQPSKQTARSISHSAIAGAGVYTELVNLKST 150


>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 182 VTTDVMYVVSIRVAVSIMVEALRRLVVARTPAKLIQATTAVMLSL 316
           V T ++  V+I  AV   V A+RR  +ARTPA L      ++  L
Sbjct: 54  VATQLVVTVAIAAAV-YSVPAIRRFFLARTPASLAAFVLVIVAPL 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,227
Number of Sequences: 37544
Number of extensions: 202060
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)