Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_A01
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   1.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   1.2  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    28   3.6  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    28   3.6  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 13   PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 189
            P +P+ G  PV PS          T  + S ++P+ Y   S + S +S S  PT P Y+
Sbjct: 1598 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1655


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 13   PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 189
            P +P+ G  PV PS          T  + S ++P+ Y   S + S +S S  PT P Y+
Sbjct: 1605 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1662


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 64  DIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 189
           D+ +    +YA ++    +YH   H  S  S ++ P++P YN
Sbjct: 162 DMSIIEQQQYAENIPESKQYHRMHHFKSVISHNSLPSNPNYN 203


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 64  DIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 189
           D+ +    +YA ++    +YH   H  S  S ++ P++P YN
Sbjct: 162 DMSIIEQQQYAENIPESKQYHRMHHFKSVISHNSLPSNPNYN 203


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
            C05D12.2 protein.
          Length = 1052

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 298  GCSLDEFGRCSCYH*TSKGFHHDAYCYANRNYVHDVC 188
            G ++D+FGRC C    +  +  D  C+    Y   +C
Sbjct: 960  GGNVDKFGRCICPSRYTGDYCWDRICHPPATYSFGIC 996


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,673
Number of Sequences: 27780
Number of extensions: 196298
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)