Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P23
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   161   4e-41
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   4.5  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.9  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   5.9  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   7.9  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   7.9  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   7.9  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   7.9  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  161 bits (392), Expect = 4e-41
 Identities = 69/116 (59%), Positives = 92/116 (79%)
 Frame = +1

Query: 37  MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 216
           M+ Q+K++ SFEKRKTE ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 217 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 384
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  ED FLYI +S EN +G
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 137 STITGTRSGYFLRIFSPSVFLFSKECSSLYWNFIFVF 27
           S +   R+G+ + +    +++F  EC   Y N I +F
Sbjct: 163 SPLPSPRTGHSMLLVDSKLWIFGGECQGKYLNDIHLF 199


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 28  KTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVP 126
           K  M+ + K+  SFEKR     +++ K P R P
Sbjct: 63  KETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTP 95


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 432 HLKYNKSNI*NFK----ELISINIFIRKCYVEKEILVVMLLVERTHSCRCWWNH 283
           HLK   +++ N++    ++ S +   R+C   K I    +     HS  C W H
Sbjct: 10  HLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGH 63


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 94  KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 183
           KIR +YPDR+      AP  +  D   + Y
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPY 183


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 97  FSHPPSSFSQKNVLLYIGISFSFFFT 20
           F  PPS +    V+L + +SF+ FFT
Sbjct: 455 FIPPPSRYPDLWVILNVTLSFAGFFT 480


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 280 NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGY 387
           N+    S T+ S  ++H DE+ + +I ++DE +  +
Sbjct: 76  NIPERWSNTVNSCRRQHPDENGWQFILWTDEKIMSF 111


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 76  RKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDL 201
           RK   +K  +   D+   I EK    RLGD +KK     S++
Sbjct: 315 RKPSADKAEKT--DKTDAIAEKVSDIRLGDGEKKSSETDSEV 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,905
Number of Sequences: 5004
Number of extensions: 40442
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)