Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P23
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   211   2e-55
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   211   2e-55
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    83   8e-17
U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical p...    27   5.3  
U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical...    27   5.3  
Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop heli...    27   9.2  
U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop heli...    27   9.2  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  211 bits (516), Expect = 2e-55
 Identities = 95/116 (81%), Positives = 107/116 (92%)
 Frame = +1

Query: 37  MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 216
           MK+ YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60

Query: 217 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 384
           YFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61  YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  211 bits (516), Expect = 2e-55
 Identities = 95/116 (81%), Positives = 107/116 (92%)
 Frame = +1

Query: 37  MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 216
           MK+ YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60

Query: 217 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 384
           YFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61  YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
 Frame = +1

Query: 49  YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 225
           +KE   F +R+ + E+IR + P++VPVI+E+    R L  +D+ K+LVP  +TV +   +
Sbjct: 17  FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76

Query: 226 IRKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 384
           +R+R+ L P+ A F  VN   +   S +M +LY +  D D F+Y+ ++ +  +G
Sbjct: 77  VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130


>U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical
           protein ZK546.14b protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 25  KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 180
           KK KMK + K++    + KTEGEK + K   R     +K  + R+ D+ K+K
Sbjct: 398 KKNKMKDRRKQKWENRENKTEGEK-QTKQDKR-----KKNLQKRIDDVKKRK 443


>U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK546.14a protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 25  KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 180
           KK KMK + K++    + KTEGEK + K   R     +K  + R+ D+ K+K
Sbjct: 416 KKNKMKDRRKQKWENRENKTEGEK-QTKQDKR-----KKNLQKRIDDVKKRK 461


>AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical
           protein Y75B8A.25 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +3

Query: 93  ENSQEISGSCSSNCRESPEG*TWRPRQEEVFSTIRLNCWSILLPD*KTYSPSSRGR---- 260
           E+ ++   S SS  R  P     RPRQ  +F     +  SI+LP      P+S  +    
Sbjct: 107 EDFEKEFASPSSTARMVPFTARVRPRQNPIFGENMASLKSIVLPPPAPTKPASTPKDAHE 166

Query: 261 AFLFREQCDSTNICNYGFSLPGASRRG 341
              + +  DS N+ +Y  S P  +  G
Sbjct: 167 TVFYPQTHDSFNLDHYNGSRPSFAFAG 193


>Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical
           protein T03E6.9 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 158 SLAFGAFSTITGTRSGY-FLRIFSPSVFLFSKECSSLYWNFIFVFFY 21
           SL FGA+ +ITG  S +  L +   S  + SKE  ++  NF  +  Y
Sbjct: 209 SLIFGAWCSITGVTSVFTCLLMIYESRNIVSKETLNMQRNFTGILIY 255


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 194  DGTKYFFLSRSPSLAFGAFSTITGTRSGYFLRIFSPSVFLFSKECSSLYW 45
            +  K +F S  PS     FS  +G     F+RI   SV   +K     +W
Sbjct: 1076 NSAKNYFASPEPSEVINVFSLASGHLYERFMRIMMTSVLNNTKTQKVKFW 1125


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 194  DGTKYFFLSRSPSLAFGAFSTITGTRSGYFLRIFSPSVFLFSKECSSLYW 45
            +  K +F S  PS     FS  +G     F+RI   SV   +K     +W
Sbjct: 1076 NSAKNYFASPEPSEVINVFSLASGHLYERFMRIMMTSVLNNTKTQKVKFW 1125


>U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop helix
           protein 27 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPD 117
           + T+ KF  + E    K KTE EKIRRK  D
Sbjct: 134 ESTRRKFDTESER--RKVKTEREKIRRKKQD 162


>U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop helix
           protein 25 protein.
          Length = 313

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPD 117
           + T+ KF  + E    K KTE EKIRRK  D
Sbjct: 126 ESTRRKFDTESER--RKVKTEREKIRRKKQD 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,416,821
Number of Sequences: 27780
Number of extensions: 226955
Number of successful extensions: 724
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)