Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P21
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   2.4  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   4.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   5.5  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    25   5.5  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    24   9.6  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 212 EEMDDEQRETSKKLLDCPGIPRRVTEPSFKTHKFKSSNKLASSIPNL 352
           E + D+   T     +   +PRRV     +  + K++ K+A S PNL
Sbjct: 20  ESVHDDGPTTELDTFNTTDVPRRVNTTKARQMRPKNTLKVAFSSPNL 66


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 269 IPRRVTE-PSFKTHKFKSSNKLASSIPNLSS 358
           +P R TE PS      KSS  +A+  P+L+S
Sbjct: 300 LPNRTTEVPSISKQLSKSSTSIATVAPSLAS 330


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 159 LESDHYRMIIQGTSTLNKKRWMMNKEKHLKNF*IAPEYLDESP 287
           L+S +   I QG S  +KK+    +E+ L+N     E + E+P
Sbjct: 145 LDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENP 187


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 9   LYCIKKLQVVM*FYHPEQNHITPSYNLLVYTSVTEVVVLSKNLR*TSK 152
           L C+  L  ++      ++ I P+Y   V  ++ E ++LS N + TSK
Sbjct: 36  LLCLNVLANLLGGIFENEDKIIPNYKEAVIAALFERLLLSSNQKSTSK 83


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 74  SQLQFVSLYFSNGGSGVKQESEIDFEIIIGK 166
           ++L F  LY  + G G+     +  +II+GK
Sbjct: 35  TKLDFSILYIMSYGGGLVSGDRVALDIIVGK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,833
Number of Sequences: 5004
Number of extensions: 32890
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)