Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P21
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0791 + 31773175-31773308,31773403-31773561,31775867-317759...    30   1.0  
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114...    29   2.3  
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    27   7.2  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    27   9.5  

>02_05_0791 +
           31773175-31773308,31773403-31773561,31775867-31775927,
           31776120-31776407
          Length = 213

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 HFHIKQEEMDDEQRETSKKLLDCPGIPRRVTE 289
           H H+  +  DD+Q+     L+DCP  P RV++
Sbjct: 171 HLHVPSD--DDKQKTLKINLIDCPDHPSRVSD 200


>05_01_0166 +
           1145829-1145971,1146211-1146235,1147330-1147425,
           1147544-1147645,1147767-1147889,1147996-1148622,
           1148710-1148883,1148965-1149181,1149312-1149394,
           1149478-1149573,1149676-1149724,1149850-1150088,
           1150547-1150618,1150694-1150804,1150930-1151282,
           1151377-1151464,1151691-1151789,1151860-1151991,
           1152119-1152222,1153179-1153215,1153334-1153367,
           1153451-1153467
          Length = 1006

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
 Frame = +2

Query: 23  ETSGCDVILSSRTEPYNSQLQFVSLYFSNGGSGVKQESEIDFEIII---GK*SLPYDNSR 193
           + + CD+I+  +  P + +   + L    GG  +   SEI  + I+   G  SLP    +
Sbjct: 229 DVNSCDIIVRDKVIPLSKESVHIVLGLPVGGLPISSNSEIGKQKILDTFGLSSLP--TVK 286

Query: 194 HFH---IKQEEMDDEQRETSKKL--LDCPGIPRRVTEPSFK 301
            F    I+ E M D+Q   S  +  L+C   P    +PS K
Sbjct: 287 FFGDKLIRNESMSDDQVLISFMMVSLNCFLCPNSSIQPSTK 327


>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +2

Query: 38  DVILSSRTEPYNSQLQFVSLYFSNGGSGVKQESEIDFEIII---GK*SLPYDNSRHFH-- 202
           D++L  +  P N Q   V L    GGS +  + +   + I+   GK S+P  + + F   
Sbjct: 184 DIVLGQKLIPLNKQFVHVVLGLPVGGSTIHSKFDSGKQKILQIFGKTSIP--SVKFFGEK 241

Query: 203 -IKQEEMDDEQ 232
            IK EE+ D+Q
Sbjct: 242 LIKNEELPDDQ 252


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +2

Query: 38  DVILSSRTEPYNSQLQFVSLYFSNGGSGVKQESEIDFEIII---GK*SLPYDNSRHFH-- 202
           D++L  +  P N Q   V L    GGS +  + +   + I+   GK S+P  + + F   
Sbjct: 187 DIVLGQKLIPLNKQSVHVVLGLPVGGSTIHSKFDYGKQKILQIFGKTSIP--SVKFFGEK 244

Query: 203 -IKQEEMDDEQ 232
            IK EE+ D+Q
Sbjct: 245 LIKNEELPDDQ 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,453
Number of Sequences: 37544
Number of extensions: 196434
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)