Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P21
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   0.90 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   4.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 261 APEYLDE-SPSHHLRHINSNHLIN*LVQFLTYHHLEH 368
           +P++ +  SPS HL  ++S      L  + ++HHL H
Sbjct: 42  SPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHH 78


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 20  KETSGCDVILSSRTEPY 70
           K    C+V+ +S TEPY
Sbjct: 190 KNPRPCNVLATSLTEPY 206


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 260 CPGIPRRVTEPSFKTHKFKSSNKLAS 337
           CPG  RR  +P+F+    K S + AS
Sbjct: 409 CPGRVRRRYQPAFRC---KPSQRFAS 431


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 447 VLKFIIDSIPPPVIILGDFYAHHSLWG 367
           VLK  I+  P    ++G    H+ +WG
Sbjct: 893 VLKMGINHGPVTAGVIGARKPHYDIWG 919


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,016
Number of Sequences: 438
Number of extensions: 2329
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)