Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P19
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    30   0.12 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   2.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   3.5  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    24   8.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   8.2  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +1

Query: 13  LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLP 192
           LPE+E E T  ++ G+G P K   K T+      E   E    ++    +T+P  ++ L 
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLE 485

Query: 193 APKVVWSHNAKPLSGG 240
                W    + L  G
Sbjct: 486 EKNEEWKSVKRSLQPG 501


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 171
           F+T LPED  ++       +G+PQK  H++ L+  +  + +Q  PE+   +  G  +  P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160

Query: 172 C 174
           C
Sbjct: 161 C 161


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 244 PCHRLEASRYGSRRPWALADRSPCTES*HPVRVSQRSPF 128
           P   L+ + YG RRP  L+  SP +   +   +S    F
Sbjct: 27  PVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTF 65


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 207 DDLGRWQTGHLARNRDILSVFHNDHLFRLLLVLRCTDYSQ 88
           D +GRW   +    ++   V  N H    + V  C  Y++
Sbjct: 225 DFIGRWDLIYKTETKEFEGVIRNKHRKDAVDVTECVGYAK 264


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  NGVGKPQKHSLKLTVVSAPKYEQKPEK 132
           + VGK Q H+ K   +  P+ +QK EK
Sbjct: 421 SSVGKEQNHTEKQVAIETPE-QQKVEK 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,143
Number of Sequences: 5004
Number of extensions: 27592
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)