Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P16
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    33   0.021
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    29   0.46 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   2.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   4.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    24   9.8  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    24   9.8  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    24   9.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    24   9.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   9.8  

>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 33.1 bits (72), Expect = 0.021
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 218 KRTRVIVILLEDCLNLDEDHEELKAYLSTNTYIKWQDPMFWERLRYAL 361
           K TR+   + +D   L  D++ +K+    +T  +WQ+   WE  R+++
Sbjct: 22  KMTRISDAIFKDHRKLQSDYQNIKSANDYDTATRWQNQFVWELARHSV 69


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 137  VVVSGNFLSSQWAMNEFRAAHTLAVKEKRTRVIVILLEDCLNLD 268
            +VVS + +SSQ A   F       V++   +V ++ L+ C ++D
Sbjct: 1028 LVVSDDQISSQEAFENFEVKMAYTVRQLSLKVFLLFLKSCSDVD 1071


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 215 EKRTRVIVILLEDCLNLDEDHEELKAYLSTN 307
           EK+  VI  L E    L+++ E +K YLS N
Sbjct: 618 EKKNLVISSLRETVAMLEKERESIKKYLSGN 648


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 269 EDHEELKAYLSTNTYIKWQDPMFWE 343
           + H E + Y++T+  IKW    FWE
Sbjct: 677 KSHTEYRTYIATDPVIKW----FWE 697


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 88  DTDADRYLGGAVAEDRRGGV 147
           D D D YL G   E+R  GV
Sbjct: 9   DVDEDEYLYGETIEERNDGV 28


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +1

Query: 298 VHEHLHQVAGPDVLG-----EAEVRPPAEEHDQRTY*RRELKDTGGVKRTPEQ 441
           + EHLH    PDVL      + +     +EH Q+    R + D    K  P Q
Sbjct: 52  LQEHLHDTILPDVLAASYRHDIDTALSTDEHTQKDRLPRWIGDNPYYKNRPPQ 104


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 158 LSSQWAMNEFRAAHTL---AVKEKRTRVIVIL----LEDCLNLDEDHEELKAYLSTNTYI 316
           L+ +W +NEF    ++   A+        V+L    L+  +  DED+  L+  L     +
Sbjct: 604 LAPKWRINEFDETGSVYYGALPYNYPEDDVLLDLDGLQYLVKNDEDYSYLQEALKDEPLM 663

Query: 317 KWQDPMFWERLRYALPRKN 373
              DP FW   R +   KN
Sbjct: 664 DINDPNFWAYERKSCKFKN 682


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +2

Query: 140 VVSGNFLSSQWAMNEFRAAHTLAVKEKRTRVIVILLEDCLNLDEDHEELKAYLSTNTYIK 319
           V S +    QW        H L+  + R    V   ED  + DE+ EE     +T    K
Sbjct: 57  VPSAHSRVEQWNQQVHNLNHELSSNKNRISSNVEGYEDDFSFDEEGEEGNNEFNTLRPNK 116

Query: 320 WQD 328
           +QD
Sbjct: 117 YQD 119


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 139 HDGPPRLLHRGSDLRRYHVPHHPVSEVHTDFKLRFQLHQQLVSYEV 2
           H GP ++L        YHVP     ++    K+RF L +  VS E+
Sbjct: 233 HVGPEQVLAVHDVSSTYHVPQLLEDKLLEYLKIRFALDKISVSREL 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,073
Number of Sequences: 5004
Number of extensions: 30697
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)