Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P16
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    51   5e-07
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    51   5e-07
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    29   2.1  
Z81069-6|CAB02993.1|  237|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    27   6.5  
AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical ...    27   6.5  

>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like receptor
            TOL-1 protein.
          Length = 1221

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
 Frame = +2

Query: 8    VRDELLMKLEPE-FKICVHFRDWVVG----DMIPTQIATSVEQSRRTVVVVSGNFLSSQW 172
            V D+L   LE E +++C+  RD          I  ++   ++ S+  ++V++ +FL ++W
Sbjct: 1070 VIDQLCRPLEDEDYQLCLLHRDGPTYCSNLHAISDELIAQMDSSQCLILVLTKHFLENEW 1129

Query: 173  AMNEFRAAHTLAVKEKRTRVIVILLEDCLNLDEDHEELKAYLSTNTYIKWQDPMFWERLR 352
               + + +H L  K +  RVI + L D ++ +   +EL   L  +T I+ +  +FW  L 
Sbjct: 1130 KTLQIKTSHQLFAKNRAKRVIAV-LGDGVDANLLDDELGQILRKHTRIEMRSHLFWTLLH 1188

Query: 353  YALPRK 370
             +LP +
Sbjct: 1189 SSLPSR 1194


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosophila)
            family protein 1 protein.
          Length = 1221

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
 Frame = +2

Query: 8    VRDELLMKLEPE-FKICVHFRDWVVG----DMIPTQIATSVEQSRRTVVVVSGNFLSSQW 172
            V D+L   LE E +++C+  RD          I  ++   ++ S+  ++V++ +FL ++W
Sbjct: 1070 VIDQLCRPLEDEDYQLCLLHRDGPTYCSNLHAISDELIAQMDSSQCLILVLTKHFLENEW 1129

Query: 173  AMNEFRAAHTLAVKEKRTRVIVILLEDCLNLDEDHEELKAYLSTNTYIKWQDPMFWERLR 352
               + + +H L  K +  RVI + L D ++ +   +EL   L  +T I+ +  +FW  L 
Sbjct: 1130 KTLQIKTSHQLFAKNRAKRVIAV-LGDGVDANLLDDELGQILRKHTRIEMRSHLFWTLLH 1188

Query: 353  YALPRK 370
             +LP +
Sbjct: 1189 SSLPSR 1194


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 160  QLTVGDERVPRCPHPRGQGEEDEGHRD 240
            QL   D R PR   PR  G EDEG+RD
Sbjct: 988  QLETRDPRDPR--DPRDDGYEDEGYRD 1012


>Z81069-6|CAB02993.1|  237|Caenorhabditis elegans Hypothetical
           protein F25H9.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 201 VWAARNSFIAHCELRKFPDTTTTVLRDCSTEVAICVGIMSPTTQSL 64
           +W  R   + H ELRK+ D+      D +T   I  G+      S+
Sbjct: 108 MWRERGDKVLHIELRKWADSALIAPLDANTMAKIANGLCDNLVTSI 153


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 209 VKEKRTRVIVILLEDCLNLDEDHEELK 289
           VK++  ++I+  L+DC  +DE++ E+K
Sbjct: 63  VKKRIYKIIIENLDDCEEIDEENTEIK 89


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 172  PL*AEEVPRHHHDGPPRLLHRGSDLRRYHVPHHPVSE 62
            P+  + +P     GPP ++ RG       VP HP+ +
Sbjct: 1046 PIPIQRLPMQRMSGPPVMMSRGPVYCSQPVPMHPMQQ 1082


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 172  PL*AEEVPRHHHDGPPRLLHRGSDLRRYHVPHHPVSE 62
            P+  + +P     GPP ++ RG       VP HP+ +
Sbjct: 1046 PIPIQRLPMQRMSGPPVMMSRGPVYCSQPVPMHPMQQ 1082


>AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical
           protein Y34B4A.5 protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 51  SVCTSETGWWGT*YRRRS 104
           S C SE+ WWG  Y R++
Sbjct: 121 SSCNSESSWWGCEYARQA 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,562,460
Number of Sequences: 27780
Number of extensions: 188846
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)