Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P15
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   0.23 
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   0.92 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   2.1  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    23   6.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    23   6.5  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    23   8.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    23   8.5  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    23   8.5  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 98  YEGDAQSRSKGLEEKVDQLTEMFTKKRVIPLNVAKFNES 214
           Y    Q  SKGL+   ++LT    K   +P N+A   ES
Sbjct: 405 YSFQTQKNSKGLQFTSNELTNPTAKYSQLPNNIANIGES 443


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 231 LGGDFTDSLNLATFNGITRFFVNISVN*STFSSSPLERLWASPS*YVRSIKKNSKD 64
           LGG  TD+      + + + FV +    + F S PL+  W SP    R I  +S+D
Sbjct: 102 LGGPHTDAALAMECSRLNQLFVVVQFGTTEFVSPPLK--WESPG---RDIGTSSRD 152


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 83  ILLTYYEGDAQSRSKGLEEKVDQLTEMFT------KKRVIPLNVAKFNESVKSPPRDYSF 244
           I+ + + GD QS +   + +++  +  F+      K+ VI L +  F    K   +DYSF
Sbjct: 454 IIESAHVGDLQSNTSLFDVRLEVPSGKFSLLKYPKKENVISLELLNFFSQFKCNKKDYSF 513

Query: 245 V 247
           V
Sbjct: 514 V 514


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  YFLHITKEMPKVVLKGWRR 140
           Y++HI  E+PK  +K + R
Sbjct: 209 YYVHIQDELPKTKVKNYFR 227


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 41  KLAKMTYKSLLFFLILLTYYEGDAQSRSKGLEEKVDQLTEMFTKKRVI 184
           KLA   Y+ + FF+  L +   +  S S  LEE +    E  T+  +I
Sbjct: 45  KLATFPYEEIEFFIPQLIHLVLNKDSESVALEEFIISQCEQNTQCALI 92


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 80  LILLTYYEGDAQSRSKGLEEKVDQLTEMFTKKRVIPLNVAKFNESVKSPPRDYS 241
           L+ L+Y +          E    Q+ E F+K   +P+ V   NE    P  ++S
Sbjct: 66  LVTLSYPQISKYFTFSPFEHTDKQIAERFSKGESLPVLVYMGNEERNGPTDNWS 119


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 101 EGDAQSRSKGLEEKVDQLTEMFTK 172
           E   Q R K LEEK+D L ++ T+
Sbjct: 70  EESVQRRLKLLEEKIDLLLDIATE 93


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 VHEEASNTVKCCQIQRVCE 219
           VH +A N  +C ++ + CE
Sbjct: 318 VHSDALNVDRCIELYKYCE 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,055
Number of Sequences: 5004
Number of extensions: 21341
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)