Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_P15
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 28 1.3
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786... 27 3.1
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 27 3.1
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 26 4.1
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 26 5.4
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 26 5.4
01_06_1261 - 35826513-35828941,35829201-35829294 26 5.4
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 26 5.4
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 25 9.4
>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 127 RAGGEGRSINGNVHEEASNTV--KCCQIQRVCEITSKRLFICGHVHC 261
R G S+ + + S T C+ CE KR +CGH +C
Sbjct: 1064 REGSSVSSMGEDNEPDLSTTALSNLCKHCGTCEDDDKRFMVCGHPYC 1110
>06_01_1009 -
7859357-7859405,7860476-7860660,7860747-7860821,
7860852-7861313,7861411-7861482,7861629-7861775,
7861888-7862043,7862136-7862306,7862505-7862675,
7862763-7862828,7864302-7864387,7864505-7864667
Length = 600
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 113 QSRSKGLEEKVDQLTEMFTKKRVIPLNVAKFNESVK--SPPRDYSFVVMFTAMAPARR 280
++R K +EE D+L +MF K ++ + N VK + + + F A A RR
Sbjct: 75 RAREKAVEELTDELEKMFEKLKLTESLLDSKNLEVKKINDEKKAAMAAQFAAEATLRR 132
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 35 IRKLAKMTYKSLLFFLILLTYYEGDAQSRSKGLEEKVDQL 154
IR + + + L F ++ T+Y GD K LE D++
Sbjct: 285 IRDIIDLYHPMALRFFLMRTHYRGDVNHSDKALEIASDRV 324
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 104 GDAQSRSKGLEEKVDQLTEMFTKKRVIPLNVAKFNESVKSPP 229
G S + L+E+ ++ ++++ +AKF E + +PP
Sbjct: 108 GSINSELRSLQERSLDISVRLKNRKLVETKLAKFVEEIVAPP 149
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 32 FIRKLAKMTYKSLLFFLILLTYYEGDAQSRSKG 130
F + K+TYK + ++ Y+ D S SKG
Sbjct: 172 FRKSTGKLTYKEVTILNNVINLYKEDQSSHSKG 204
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 116 SRSKGLEEKVDQLTEMFTKKRVIPLNV 196
S GLE+ V QLT + K V+PL +
Sbjct: 493 SNETGLEDNVQQLTIITRVKEVLPLMI 519
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 67 FAIFLNTSYILRRRCPKSF*RAGGEGRSINGNVHEEASNTVKCCQIQR 210
F + +TSY ++ KSF +A E + +E S+ V CQ R
Sbjct: 622 FWLRFSTSYHYMQKFQKSFDKAKAEMDKLTDAKAQEGSDAVPSCQSAR 669
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 217 EITSKRLFICGHVHC 261
E KR +CGH HC
Sbjct: 500 EEKDKRFLVCGHTHC 514
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 101 EGDAQSRSKGLEEKVDQLTEM 163
E A++ S G+EEKV +L EM
Sbjct: 147 EAFAKNSSTGMEEKVQKLVEM 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,599,618
Number of Sequences: 37544
Number of extensions: 132148
Number of successful extensions: 254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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