Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P13
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    24   2.6  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    24   2.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    24   3.4  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    23   4.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    23   5.9  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    23   7.8  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 224 DIVQIPDYHLQILP 183
           D++ + DYHL +LP
Sbjct: 152 DLIWVQDYHLMVLP 165


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 224 DIVQIPDYHLQILPDPDQNLDQPVHWSPCSGLKLW 120
           DIVQ  DY+  I  D D      + WSP   L LW
Sbjct: 86  DIVQ-HDYYASIQCDQDPL--SSISWSPSGELLLW 117


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 100 PGIVHRSQNLRNEVGR 53
           PG+V RS N+  E+GR
Sbjct: 386 PGVVVRSSNIPEELGR 401


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 167 LDQPVHWSPCSGLKLWL 117
           LDQ + W+   GLK+W+
Sbjct: 137 LDQALTWAEQYGLKVWI 153


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 221 IVQIPDYHLQILPDPDQNLDQPVHWSPCSGL----KLWLL 114
           ++++ D   Q  PDP Q++ Q    S C GL    + WLL
Sbjct: 26  VIRLTDRTTQ--PDPSQHIYQEEKISKCEGLSYRAREWLL 63


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 283

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 53 TAYLITEVLATVDN 94
          TAY+++E L T+DN
Sbjct: 5  TAYILSEYLQTLDN 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,552
Number of Sequences: 5004
Number of extensions: 11695
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)