Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P13
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0480 + 17632176-17632814,17633838-17633906                       27   2.1  
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    27   2.1  
01_07_0381 - 43186467-43187219                                         27   2.8  
11_01_0034 + 254163-254251,254793-254892,255130-255231,255700-25...    26   3.7  
05_03_0096 + 8356109-8356231,8356291-8356605                           26   3.7  
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392...    26   4.8  
02_03_0075 + 14846108-14847794,14847858-14848249                       26   4.8  
01_06_1183 - 35176780-35177266,35179631-35181093                       25   8.5  

>08_02_0480 + 17632176-17632814,17633838-17633906
          Length = 235

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 184 GRIWRW*SGIWTMSGR--IWWR 243
           GRIWRW SG+ T  G   +W R
Sbjct: 156 GRIWRWWSGMTTGGGGSILWMR 177


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 245 YRHQILPDIVQIPDYHLQILPD--PDQNLDQPVHW 147
           Y+H    D++   DYHL  LP    D +++  V W
Sbjct: 260 YQHYKEGDVIWCHDYHLMFLPKCLKDHDINMKVGW 294


>01_07_0381 - 43186467-43187219
          Length = 250

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 233 ILPDIVQIPDYHLQILPDPDQNLDQPV 153
           +LPD + IP   + +L D D+  D+PV
Sbjct: 124 LLPDPINIPPDCIVVLNDDDEPADRPV 150


>11_01_0034 +
           254163-254251,254793-254892,255130-255231,255700-255756,
           255778-255783
          Length = 117

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  LRRFWLRWTMPGWIW 110
           +RR  L W  PGW W
Sbjct: 87  MRRLLLLWQKPGWAW 101


>05_03_0096 + 8356109-8356231,8356291-8356605
          Length = 145

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 18  RLCSFSIRTRM*RPTSLRRFWLRWTMPGWIW 110
           R C+   RT+  +  SL   W+ WT   W +
Sbjct: 94  RACNTGTRTKARKRGSLPFLWMDWTEESWAY 124


>11_06_0657 +
           25938382-25938443,25938511-25938718,25939222-25939268,
           25939473-25939805,25940529-25940613,25940689-25940884,
           25941012-25941182,25941261-25941318,25941429-25941657,
           25942296-25943183
          Length = 758

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 173 QNLDQPVHWSPCSGLKLW 120
           Q LD P HW PC  ++ W
Sbjct: 672 QQLD-PNHWDPCQSIQEW 688


>02_03_0075 + 14846108-14847794,14847858-14848249
          Length = 692

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 69  RRFWLRWTMPGW 104
           R FW+ W  PGW
Sbjct: 113 RHFWIPWFRPGW 124


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 9   F*NRLCSFSIRTRM*RPTSLRRFWLRWTMPGWI 107
           F  RL +F  ++    PTS R  +  + +PGW+
Sbjct: 611 FKRRLIAFRGKSEKFHPTSCRHRFNHFHLPGWL 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,454,474
Number of Sequences: 37544
Number of extensions: 84638
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)