Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P13
         (248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   9.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 209 PDYHLQILPDPDQNLDQPVHWS 144
           P  HL  L  P ++ D P++ S
Sbjct: 51  PSTHLMDLSSPPEHRDLPIYQS 72


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 239 HQILPDIVQIPD 204
           H++ P+I+ IPD
Sbjct: 68  HKLPPNIIAIPD 79


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 102 SLALSTVARTSV 67
           SLA+ TVAR++V
Sbjct: 900 SLAVDTVARSNV 911


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,056
Number of Sequences: 438
Number of extensions: 885
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)