Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P12
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   130   8e-32
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   124   4e-30
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   0.85 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   0.85 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   1.1  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   2.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   4.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   4.5  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.0  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   6.0  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   7.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   7.9  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  130 bits (314), Expect = 8e-32
 Identities = 63/96 (65%), Positives = 75/96 (78%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTDRLLARRQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MSE   TIRTRKFMT+RLL R+QMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 225 FKTNFGGGKSTGFALIYDTLD*AKKFEPKHRLARHG 332
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95



 Score = 27.5 bits (58), Expect = 0.85
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 346 KRPTRKQRKERKNRLKKVRG 405
           ++  R+QRK+RKNR KKV G
Sbjct: 101 QKVARQQRKQRKNRGKKVFG 120


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  124 bits (300), Expect = 4e-30
 Identities = 58/96 (60%), Positives = 73/96 (76%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTDRLLARRQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MSE   TIRTRKFMT+RLL R+QMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 225 FKTNFGGGKSTGFALIYDTLD*AKKFEPKHRLARHG 332
            +T++GGG++TGFALIYD ++  KKFEP +RL R G
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95



 Score = 27.5 bits (58), Expect = 0.85
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 346 KRPTRKQRKERKNRLKKVRG 405
           ++  R+QRK+RKNR KKV G
Sbjct: 101 QKVARQQRKQRKNRGKKVFG 120


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 EIREKLAKMYKVTPDVVFVFGFKTNFGG 245
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 233 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 111
           RLE EH    V R+      L    +F D R+ W Q+I+  L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 289  EQRSLSQNTDSLVTACMSKKRPTRKQRKERKNRLKK 396
            EQ     +T ++++     K PT+K ++E+K  L K
Sbjct: 1102 EQEKADASTTTVLSDSRFMKAPTKKSQREKKKELSK 1137


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 286 TEQRSLSQNTDSLVTACMSKKRPTRKQRKERK 381
           TE  + SQN DS       K+R  +K+RK  K
Sbjct: 39  TENFTASQNNDSAKREKRKKQRQKQKERKRAK 70


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 260 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 123
           +G +A  E      HENY      H  E++ D    + R ++  DI
Sbjct: 60  NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 298 FFAQSSVS*IKANPVDLPPPKFVLKPNTK 212
           +++Q++     AN V  PPP+    PN+K
Sbjct: 477 YYSQANPQMYYANQVSAPPPQGSFDPNSK 505


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 127 TSHTICLRANNLSVINLRVRIVAVPSLIFDYFRDFGVKTHVS 2
           TSH+    +++ S  NL       P L+FDYF D G K HV+
Sbjct: 32  TSHSSTATSSHYSKNNLPSDS---PDLLFDYFID-GHKIHVN 69


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 304 SNFFAQSSVS*IKANPVDLPPPKFVLKPNTKTTS 203
           SN+ A S V  +  N +DLPPP   +  + K  S
Sbjct: 135 SNWRADSGVVQVIDNIIDLPPPALEILSSEKDFS 168


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 336 TGRDERVCVLAQTSLLSLACRRLKQ 262
           +G DER  V      L+  CRRLKQ
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQ 543


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 179 ELFTDLSFADGRFSWMQDIAYHLPARQQSVGHKFTRT 69
           +L  DLS  + + S +Q   +H+ A+ +S   ++T T
Sbjct: 797 KLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTAT 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,267
Number of Sequences: 5004
Number of extensions: 28290
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)