Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_P12
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 134 2e-32
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 131 2e-31
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 126 5e-30
01_06_0355 + 28657833-28660665,28660762-28661126 30 0.81
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 28 3.3
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016... 27 7.6
01_07_0042 + 40697153-40697407,40697479-40698081 27 7.6
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 134 bits (325), Expect = 2e-32
Identities = 61/92 (66%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Frame = +3
Query: 63 TIRTRKFMTDRLLARRQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 239
T+RTRKFMT+RLL+R+Q V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 240 GGGKSTGFALIYDTLD*AKKFEPKHRLARHGL 335
GGGKSTGF LIYD LD AKK+EPK+RL R+GL
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGL 102
Score = 33.1 bits (72), Expect = 0.087
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 340 SKKRPTRKQRKERKNRLKKVRG 405
+K +RKQ KERKNR KK+RG
Sbjct: 104 TKVEKSRKQMKERKNRAKKIRG 125
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 131 bits (316), Expect = 2e-31
Identities = 60/92 (65%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Frame = +3
Query: 63 TIRTRKFMTDRLLARRQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 239
T+RTRKFMT+RLL+R+Q V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 240 GGGKSTGFALIYDTLD*AKKFEPKHRLARHGL 335
GGGKSTGF LIYD LD AKK+EPK+RL R+GL
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGL 102
Score = 33.1 bits (72), Expect = 0.087
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 340 SKKRPTRKQRKERKNRLKKVRG 405
+K +RKQ KERKNR KK+RG
Sbjct: 104 TKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 126 bits (305), Expect = 5e-30
Identities = 58/89 (65%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +3
Query: 63 TIRTRKFMTDRLLARRQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 239
T+RTRKFMT+RLL+R+Q V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 240 GGGKSTGFALIYDTLD*AKKFEPKHRLAR 326
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 33.1 bits (72), Expect = 0.087
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 340 SKKRPTRKQRKERKNRLKKVRG 405
+K +RKQ KERKNR KK+RG
Sbjct: 132 TKVEKSRKQMKERKNRAKKIRG 153
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 29.9 bits (64), Expect = 0.81
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 223 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLSVINLRVRIVAVPSLI 44
PN S +TL L + + L +GFP CK H + + + L +++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRL------LKVVLIPSIL 723
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 292 QRSLSQNTDSLVTACMSKKRPTRKQRKERKNRLKKVR 402
QRS+S++ DS +T K + QR E K L KVR
Sbjct: 781 QRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVR 817
>03_05_0341 +
23300588-23300710,23300958-23301363,23301463-23301671,
23301944-23302298,23302392-23302630,23303777-23304055
Length = 536
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 211 FSCSVSRRTSVVANRP----DLL*STTR*TEQRSLSQNTDSLVTACMSKKR 351
FSC+ R S V ++ D S++ T Q S S+NT++L C S ++
Sbjct: 125 FSCAGIRNGSCVQDKTVDPVDSSGSSSNDTTQSSRSRNTENLTAMCSSSEK 175
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 289 QSSVS*IKANPVDLPPPKFVLKP---NTKTT 206
QSSV + + LPPP FV P NT+TT
Sbjct: 137 QSSVRSVSSTCKPLPPPPFVRDPKFSNTRTT 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,338
Number of Sequences: 37544
Number of extensions: 182413
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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