Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_P12
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 138 2e-33
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 1e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 32 0.18
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 6.9
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 6.9
U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical pr... 26 9.1
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 26 9.1
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 138 bits (333), Expect = 2e-33
Identities = 61/91 (67%), Positives = 76/91 (83%)
Frame = +3
Query: 63 TIRTRKFMTDRLLARRQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 242
TIRTRK +T++LL R+QMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 243 GGKSTGFALIYDTLD*AKKFEPKHRLARHGL 335
GGKS GFAL+YDT+D AKKFEPK+RL R GL
Sbjct: 66 GGKSKGFALVYDTIDFAKKFEPKYRLVRMGL 96
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 346 KRPTRKQRKERKNRLKKVRG 405
++P RKQRKERKNR KKVRG
Sbjct: 101 EKPGRKQRKERKNRQKKVRG 120
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 1e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 114 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 212
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 31.9 bits (69), Expect = 0.18
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 258 GFALIYDTLD*AKKFEPKH 314
GF L+YDT D A K++P+H
Sbjct: 54 GFTLVYDTFDFANKYQPEH 72
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 286 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 161
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 286 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 161
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 286 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 161
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 286 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 161
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical
protein C37A2.6 protein.
Length = 244
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 200 RHFVHFSELFTDLSFADGRFSWMQDI 123
R F+ ++F D FA+ FSW++ I
Sbjct: 156 RKFILLGDMFYDSDFAELLFSWLKKI 181
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 125 IAYHLPARQQSVGHKFTRTNRRCSFTHF 42
+A H+ A + S+G+ + +C+ HF
Sbjct: 991 VAMHISAEEGSIGNTYPLPQMKCTIDHF 1018
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,911
Number of Sequences: 27780
Number of extensions: 162638
Number of successful extensions: 504
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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