Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P10
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   6.9  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   9.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.1  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 397 NYDSVSNFISLYDAFDRRTTTVALADLYQHYE 492
           N+D +     LYD F  + T   +A++  H E
Sbjct: 626 NHDVIITLSELYDGFPLKGTFTNVAEIISHLE 657


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 28  SAARGSVITFLFYLASSRCMEREKPTSLLLEK 123
           +A+  S    LFY+++ RC     P  +LL+K
Sbjct: 270 TASSDSSYILLFYVSTIRCFVALDPPGVLLDK 301


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 334 HQHEELATRAEVILRRLLVTDNYDSVSNFISLYDAFDRRTTTVALADL 477
           H H+ +       LR+LL+     SVSN I + +   +  +T+ + D+
Sbjct: 631 HSHKFILCARSSFLRKLLLQKKKSSVSNIIYI-EEITQSHSTIRVEDI 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,703
Number of Sequences: 5004
Number of extensions: 20768
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)